Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 3.5e-168 594.7 276 100.0
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 3.5e-107 392.1 281 63.3
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 2.3e-106 389.4 281 61.6
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 5.0e-106 388.3 277 63.5
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 6.6e-106 387.9 266 65.4
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 8.6e-106 387.5 273 62.6
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 9.5e-105 384.0 282 62.4
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 6.2e-104 381.3 281 63.3
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 1.4e-103 380.2 278 62.2
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 2.3e-103 379.4 283 61.8
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 4.0e-103 378.6 278 62.9
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 1.5e-102 376.7 272 64.0
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 2.0e-102 376.3 278 61.2
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 5.8e-102 374.8 280 60.4
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 1.9e-100 369.8 251 64.9
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 3.2e-100 369.0 253 61.7
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 3.2e-100 369.0 263 63.5
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 3.2e-100 369.0 272 62.1
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 7.0e-100 367.9 265 63.8
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 6.0e-99 364.8 256 62.5
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 6.0e-99 364.8 268 63.8
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 7.8e-99 364.4 275 59.6
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 7.8e-99 364.4 252 63.1
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 1.3e-98 363.6 275 59.3
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 5.0e-98 361.7 251 62.5
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 6.6e-98 361.3 268 58.2
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 6.6e-98 361.3 268 59.3
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 6.6e-98 361.3 281 59.4
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 6.6e-98 361.3 305 57.0
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 1.9e-97 359.8 272 59.9
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 2.5e-97 359.4 275 58.5
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 3.3e-97 359.0 252 60.7
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 3.3e-97 359.0 252 61.1
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 4.3e-97 358.6 281 60.1
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 1.2e-96 357.1 265 60.4
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.6e-96 356.7 266 61.7
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 2.1e-96 356.3 275 58.2
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 2.8e-96 355.9 252 62.3
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 4.7e-96 355.1 317 54.6
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 4.7e-96 355.1 270 59.6
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 8.1e-96 354.4 317 54.6
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 8.1e-96 354.4 329 54.4
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 1.8e-95 353.2 269 60.6
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 2.3e-95 352.8 272 60.3
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 6.8e-95 351.3 252 60.3
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 6.8e-95 351.3 269 58.7
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 2.6e-94 349.4 266 60.9
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 5.8e-94 348.2 252 58.7
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 3.7e-93 345.5 281 57.3
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 4.9e-93 345.1 266 57.1
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.1e-92 344.0 288 56.9
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 7.1e-92 341.3 340 48.5
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 2.1e-91 339.7 282 55.7
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 1.7e-90 336.7 268 54.9
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 2.3e-90 336.3 266 54.9
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 1.2e-88 330.5 269 55.4
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 1.2e-88 330.5 269 54.6
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 4.7e-88 328.6 257 56.4
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 6.2e-88 328.2 274 56.2
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 1.4e-87 327.0 268 55.6
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 3.1e-87 325.9 272 54.8
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 4.0e-87 325.5 266 54.5
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 5.2e-87 325.1 268 54.9
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 5.2e-87 325.1 281 55.2
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 3.4e-86 322.4 227 64.8
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 4.4e-86 322.0 270 53.3
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 9.9e-86 320.9 267 54.3
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 1.7e-85 320.1 270 55.6
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 1.9e-84 316.6 309 46.9
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 1.9e-84 316.6 272 53.7
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 1.6e-83 313.5 347 44.4
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 2.1e-83 313.2 251 55.8
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 2.1e-83 313.2 244 56.6
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 6.6e-82 308.1 267 53.2
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 1.1e-81 307.4 252 54.4
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 1.5e-81 307.0 245 55.5
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 4.7e-80 302.0 283 48.8
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 2.4e-79 299.7 262 55.7
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 5.2e-79 298.5 193 69.4
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 5.2e-79 298.5 244 55.7
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 1.2e-78 297.4 256 52.3
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 7.6e-78 294.7 242 55.0
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 6.4e-77 291.6 200 64.0
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 1.4e-76 290.4 200 64.5
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 2.1e-75 286.6 207 62.3
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 1.3e-74 283.9 207 63.3
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 2.3e-74 283.1 242 53.7
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 6.6e-74 281.6 220 56.8
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 8.7e-74 281.2 202 63.4
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 4.3e-73 278.9 230 56.5
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 1.6e-72 276.9 219 57.5
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 2.8e-72 276.2 202 59.4
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 3.6e-72 275.8 253 51.4
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 4.8e-72 275.4 258 49.6
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 1.4e-71 273.9 201 57.7
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 3.4e-70 269.2 206 59.2
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 4.5e-70 268.9 202 61.9
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 1.4e-68 263.8 314 43.3
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 1.6e-67 260.4 210 54.8
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 4.6e-67 258.8 188 64.4
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 1.1e-60 237.7 353 38.5
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 5.6e-57 225.3 180 56.1
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 2.8e-56 223.0 201 50.7
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 1.1e-55 221.1 236 43.2
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 2.4e-55 219.9 207 50.2
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 1.1e-52 211.1 226 46.5
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 1.8e-50 203.8 269 38.3
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 8.7e-50 201.4 236 41.1
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 2.8e-48 196.4 138 65.9
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 3.2e-44 183.0 169 53.3
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 2.6e-33 146.7 156 41.7
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 3.7e-32 142.9 179 40.2
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 1.3e-29 134.4 124 51.6
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 6.5e-29 132.1 166 41.0
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 5.2e-26 122.5 152 46.1
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 2.2e-21 107.1 93 58.1
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 2.0e-17 94.0 243 28.0
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 2.7e-14 83.6 113 41.6
Manes.04G030750 Manihot esculenta HOM05D006653 ORTHO05D008346 5.2e-10 69.3 56 55.4
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 9.8e-09 65.1 73 43.8
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 3.7e-08 63.2 72 45.8


User provided reference genes

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