Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 3.4e-161 571.6 295 100.0
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 7.5e-100 367.9 261 73.2
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 7.8e-97 357.8 300 63.0
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 7.3e-95 351.3 292 65.4
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.2e-94 350.5 303 61.7
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.6e-94 350.1 292 64.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.6e-94 350.1 286 64.0
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 4.7e-94 348.6 303 61.7
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.1e-94 347.8 293 61.8
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.4e-90 336.3 244 71.3
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.7e-89 332.8 285 62.8
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 2.5e-87 326.2 291 62.5
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 5.6e-87 325.1 230 69.1
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.2e-84 317.4 275 61.8
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 4.4e-84 315.5 228 70.6
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 9.9e-84 314.3 242 66.1
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.3e-83 313.9 229 68.6
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.7e-83 313.5 252 65.1
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 2.9e-83 312.8 291 58.8
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 6.4e-83 311.6 241 66.0
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.1e-82 310.8 267 62.9
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.9e-82 310.1 228 67.1
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 2.4e-82 309.7 284 58.8
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.2e-81 307.4 229 65.1
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.2e-81 307.4 231 67.1
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.6e-81 307.0 264 60.6
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 1.6e-81 307.0 256 61.3
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 3.5e-81 305.8 315 53.3
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 4.6e-81 305.4 271 60.5
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 4.6e-81 305.4 227 67.8
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 6.0e-81 305.1 262 62.2
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.0e-80 304.3 256 60.5
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 1.3e-80 303.9 227 68.3
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.3e-80 303.9 257 60.3
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.3e-80 303.1 281 59.4
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.0e-80 302.8 255 62.7
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.1e-80 302.0 227 67.8
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 5.1e-80 302.0 255 61.2
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 6.6e-80 301.6 256 60.2
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 8.7e-80 301.2 229 68.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 8.7e-80 301.2 256 59.8
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.1e-79 300.8 261 57.9
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.1e-79 300.8 228 65.4
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 1.1e-79 300.8 265 60.0
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.5e-79 300.4 258 63.2
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.9e-79 300.1 259 60.6
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.5e-79 299.7 238 64.3
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.3e-79 298.9 227 67.4
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 5.6e-79 298.5 256 64.5
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 5.6e-79 298.5 257 60.7
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 9.6e-79 297.7 256 61.7
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.6e-79 297.7 260 59.2
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 2.1e-78 296.6 248 62.1
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 2.8e-78 296.2 262 59.2
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 2.8e-78 296.2 229 66.4
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 3.6e-78 295.8 234 63.7
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 8.1e-78 294.7 303 51.8
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.1e-77 294.3 257 59.9
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.4e-77 293.9 228 62.7
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.4e-77 293.1 283 55.5
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 3.1e-77 292.7 229 64.2
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 9.0e-77 291.2 287 55.7
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 9.0e-77 291.2 238 62.2
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.4e-76 289.3 273 57.5
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.4e-76 289.3 308 53.9
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 4.4e-76 288.9 230 62.2
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 4.4e-76 288.9 254 61.0
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.3e-75 287.3 275 57.1
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.3e-75 287.3 245 61.6
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.7e-75 287.0 237 62.4
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 2.2e-75 286.6 255 60.0
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.2e-75 286.6 258 57.8
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 2.9e-75 286.2 237 62.4
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 3.8e-75 285.8 268 57.5
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 3.8e-75 285.8 231 64.9
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 3.8e-75 285.8 302 53.6
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.9e-75 285.4 254 59.1
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 4.9e-75 285.4 272 57.4
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 6.4e-75 285.0 274 55.8
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 8.4e-75 284.6 223 64.1
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 8.4e-75 284.6 235 62.1
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.1e-74 284.3 255 59.6
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.4e-74 283.9 229 62.0
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 2.4e-74 283.1 256 58.2
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.4e-74 283.1 233 60.9
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 3.2e-74 282.7 257 57.6
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.2e-74 282.7 225 60.4
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 4.2e-74 282.3 275 55.3
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 5.4e-74 282.0 279 55.2
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.2e-73 280.8 228 62.7
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.2e-73 280.8 240 61.7
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.2e-73 280.8 255 57.3
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 7.8e-73 278.1 270 54.8
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.0e-72 276.2 227 62.1
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 3.0e-72 276.2 275 54.2
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 8.7e-72 274.6 275 53.8
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.1e-71 274.2 274 54.0
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.1e-71 274.2 300 50.7
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.5e-71 273.9 243 59.3
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.3e-70 270.8 227 60.8
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.8e-70 269.6 238 59.7
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 1.1e-69 267.7 237 57.8
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.8e-69 266.9 226 61.1
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 2.4e-69 266.5 233 57.9
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.4e-69 266.5 219 62.1
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 5.3e-69 265.4 226 59.7
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 2.0e-68 263.5 294 52.7
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.4e-68 262.7 320 50.3
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 3.4e-68 262.7 203 65.5
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 4.5e-68 262.3 217 60.4
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.4e-67 258.5 286 52.8
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.4e-66 256.5 231 57.6
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.2e-66 256.1 266 52.3
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.4e-66 255.4 269 53.5
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 2.3e-64 250.0 154 79.2
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.1e-63 247.7 236 56.8
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 7.4e-63 245.0 195 62.1
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 4.5e-60 235.7 224 54.0
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 5.8e-60 235.3 286 50.3
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 9.9e-60 234.6 283 47.3
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 4.9e-59 232.3 264 49.6
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.9e-59 232.3 201 59.2
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.6e-57 227.3 182 67.0
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.1e-57 226.9 255 53.3
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 9.6e-55 218.0 225 52.9
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 2.1e-54 216.9 217 53.0
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.1e-54 216.9 165 64.8
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 9.0e-53 211.5 150 69.3
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.5e-52 210.7 167 64.1
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.4e-52 209.5 147 70.7
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 2.2e-51 206.8 265 46.4
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 6.5e-51 205.3 144 70.8
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.6e-46 190.7 160 60.0
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.2e-46 190.3 230 47.4
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 6.5e-43 178.7 230 43.5
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.4e-42 177.6 162 55.6
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 1.0e-40 171.4 149 64.4
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 9.7e-39 164.9 162 54.3
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.8e-38 162.5 136 61.0
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.9e-37 158.7 150 54.0
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 6.5e-35 152.1 97 74.2
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 9.4e-34 148.3 129 59.7
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.4e-29 133.7 162 51.9
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 7.7e-28 128.6 210 39.0
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 7.2e-26 122.1 95 65.3
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 3.7e-22 109.8 238 32.8
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 4.8e-22 109.4 244 32.0
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.1e-21 106.7 134 47.0
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.2e-17 94.7 89 53.9
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.0e-17 92.0 65 70.8
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 5.2e-08 62.8 157 32.5
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 6.8e-08 62.4 248 25.8
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 1.3e-06 58.2 187 28.9


User provided reference genes

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