Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 3.3e-167 591.7 301 100.0
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 2.4e-117 426.0 306 73.9
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 9.1e-109 397.5 268 72.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.8e-107 392.1 269 73.2
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.2e-106 389.0 262 72.1
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.1e-105 386.3 281 70.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.3e-103 379.0 296 67.6
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.2e-100 370.5 297 64.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.2e-100 370.5 309 64.1
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 5.9e-100 368.2 297 64.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 5.9e-100 368.2 290 63.8
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.3e-99 367.1 289 66.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.3e-99 367.1 297 64.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.2e-99 366.3 301 63.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.8e-99 365.5 292 63.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-98 364.0 264 68.9
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-98 363.6 276 63.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.4e-98 363.6 309 63.8
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.9e-98 363.2 270 65.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.5e-98 362.8 265 68.3
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.2e-98 362.1 262 67.6
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 4.2e-98 362.1 285 65.6
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.5e-98 361.7 289 62.3
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 7.2e-98 361.3 262 69.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.7e-97 359.4 260 68.1
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.7e-97 359.4 300 62.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.6e-97 359.0 263 67.3
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 6.1e-97 358.2 246 71.5
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.4e-96 357.1 282 64.9
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.0e-96 355.9 276 63.0
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.9e-96 355.5 290 59.7
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.2e-96 355.1 300 61.0
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 6.7e-96 354.8 254 70.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 8.8e-96 354.4 302 61.6
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 8.8e-96 354.4 300 59.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.4e-95 352.1 222 75.7
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.4e-95 351.3 270 64.4
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 9.7e-95 350.9 296 59.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.3e-94 350.5 264 65.5
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.8e-94 349.4 276 65.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 4.8e-94 348.6 299 60.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 4.8e-94 348.6 262 64.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 6.3e-94 348.2 299 60.5
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.8e-93 346.7 298 63.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 7.0e-93 344.7 277 61.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 7.0e-93 344.7 301 62.8
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.6e-92 343.6 303 58.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.0e-92 343.2 222 73.9
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.5e-92 342.0 300 58.3
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 5.9e-92 341.7 376 52.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-91 340.9 329 55.6
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.3e-91 340.5 265 64.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.2e-91 339.7 329 55.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.2e-91 339.7 224 72.3
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.9e-91 339.3 321 56.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.5e-91 337.8 263 64.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.9e-90 336.7 289 62.6
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.2e-90 335.9 310 60.0
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.2e-90 335.9 291 59.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.2e-90 335.9 296 60.5
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.2e-90 335.5 292 58.2
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 5.5e-90 335.1 274 62.8
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.0e-88 330.9 283 57.6
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.4e-88 330.5 222 71.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.3e-88 329.7 259 64.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.0e-88 329.3 313 56.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 5.2e-88 328.6 260 63.5
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.5e-87 327.0 304 58.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.0e-87 326.6 222 71.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.0e-87 326.6 382 50.5
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 3.3e-87 325.9 296 55.4
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.3e-87 325.9 220 69.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.8e-85 320.1 317 56.2
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.2e-84 317.4 260 60.0
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.2e-83 313.2 293 57.0
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.9e-83 312.8 259 59.1
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.0e-83 312.0 305 57.4
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 2.5e-82 309.7 260 59.6
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.1e-81 305.1 271 55.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.3e-80 303.1 302 52.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.0e-80 302.8 292 54.8
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.8e-80 301.6 307 55.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.7e-78 297.0 282 55.3
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.7e-78 297.0 291 54.3
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.2e-78 296.6 302 54.6
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.2e-78 296.6 300 54.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 8.3e-78 294.7 381 46.7
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-77 294.3 262 55.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.8e-77 293.5 320 50.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 9.1e-77 291.2 289 55.4
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-76 290.8 299 54.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.6e-76 290.4 261 57.9
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.7e-76 289.7 264 55.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.7e-76 289.7 283 55.1
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-75 287.7 298 53.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-75 287.3 294 54.8
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-75 287.0 297 53.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.9e-75 286.2 310 51.6
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 5.0e-75 285.4 267 53.6
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 6.6e-75 285.0 267 53.6
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 6.6e-75 285.0 267 53.6
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 8.6e-75 284.6 242 55.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-74 283.9 311 52.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-74 282.3 308 52.6
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.2e-74 282.3 267 53.9
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.2e-74 282.3 309 53.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 9.5e-74 281.2 265 54.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.6e-73 280.4 260 54.6
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-73 280.0 265 54.0
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.0e-72 277.7 310 51.3
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.0e-72 277.7 223 62.3
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 4.0e-72 275.8 296 51.7
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 5.2e-72 275.4 313 49.2
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.8e-72 275.0 225 60.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 8.9e-72 274.6 306 49.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.0e-71 273.5 225 59.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.2e-70 270.0 235 58.7
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 2.8e-70 269.6 223 59.2
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-68 263.5 277 51.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.9e-68 261.9 261 53.3
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.0e-67 261.2 277 48.7
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 6.6e-67 258.5 228 56.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.8e-65 253.1 179 72.1
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.0e-65 251.5 200 63.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.8e-64 250.4 263 51.0
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 8.6e-59 231.5 210 55.2
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-58 230.3 210 54.8
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.5e-58 229.9 217 53.9
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.5e-58 229.9 210 54.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 7.3e-58 228.4 210 55.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.6e-57 227.3 210 56.7
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-57 226.9 210 54.8
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.2e-57 225.3 221 52.5
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.4e-56 224.2 218 52.8
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.4e-55 219.5 209 54.5
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 5.8e-55 218.8 261 47.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.5e-55 218.4 214 52.8
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.2e-53 213.0 152 68.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.5e-50 203.4 203 50.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 9.5e-50 201.4 231 47.6
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 9.5e-50 201.4 139 72.7
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.3e-48 196.8 150 65.3
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 4.9e-46 189.1 224 53.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.9e-42 177.2 174 59.8
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.9e-42 177.2 127 66.9
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.3e-42 176.4 239 44.8
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 9.5e-42 174.9 168 51.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-40 171.4 143 57.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-37 160.2 127 65.4
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 5.4e-37 159.1 258 44.2
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 7.1e-37 158.7 258 43.8
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 4.6e-36 156.0 122 66.4
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.3e-35 154.5 262 37.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.5e-34 150.2 190 50.5
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 5.6e-34 149.1 120 60.0
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 9.0e-32 141.7 234 38.5
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.6e-28 131.0 135 47.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.1e-28 130.6 215 37.7
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-25 121.3 83 68.7
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 6.2e-25 119.0 251 31.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.4e-24 117.9 187 38.5
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-24 117.5 76 69.7
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 3.4e-23 113.2 87 59.8
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.1e-21 108.2 84 61.9
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.9e-20 102.1 95 56.8
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.0e-19 100.1 85 62.4
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.2e-13 80.1 179 36.9
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 6.7e-11 72.4 74 55.4
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.5e-10 70.5 166 29.5
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 5.6e-10 69.3 151 33.1
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.3e-09 68.2 182 33.5
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.6e-09 67.8 149 32.2
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 2.1e-09 67.4 183 32.2
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.2e-09 65.9 59 54.2
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 4.0e-08 63.2 109 40.4
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 9.0e-08 62.0 62 51.6


User provided reference genes

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