Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 2.4e-173 612.1 308 100.0
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 3.1e-112 409.1 318 68.6
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 9.0e-104 380.9 303 67.3
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.5e-103 380.2 313 66.1
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 9.9e-103 377.5 309 65.0
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.3e-102 377.1 313 65.5
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.2e-100 370.5 309 67.3
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.1e-100 369.8 312 65.4
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.3e-99 367.1 315 64.4
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 5.1e-99 365.2 306 63.7
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 6.7e-99 364.8 310 64.8
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.9e-98 363.2 322 61.8
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 9.6e-98 360.9 290 66.2
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 1.6e-97 360.1 306 62.4
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 2.8e-97 359.4 324 60.8
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 3.7e-97 359.0 316 62.7
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 6.2e-97 358.2 313 64.2
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.4e-96 356.3 310 63.5
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 2.6e-95 352.8 321 59.2
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 4.5e-95 352.1 324 59.0
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 5.8e-95 351.7 315 60.3
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 7.6e-95 351.3 324 59.3
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 7.6e-95 351.3 312 62.5
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 7.6e-95 351.3 309 62.1
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.3e-94 350.5 309 62.1
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 3.8e-94 349.0 305 63.9
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 6.4e-94 348.2 320 59.1
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 8.4e-94 347.8 323 61.0
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.4e-93 347.1 325 60.0
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.4e-93 347.1 328 58.8
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 2.4e-93 346.3 296 63.9
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 5.5e-93 345.1 304 59.2
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 7.1e-93 344.7 321 59.2
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 9.3e-93 344.4 235 74.9
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 9.3e-93 344.4 309 63.1
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 1.2e-92 344.0 325 60.0
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 1.6e-92 343.6 308 60.7
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 3.5e-92 342.4 297 62.6
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 7.9e-92 341.3 330 59.1
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 1.3e-91 340.5 340 58.5
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 1.8e-91 340.1 330 57.0
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.8e-91 340.1 331 58.6
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.8e-91 340.1 331 58.6
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 5.1e-91 338.6 326 58.3
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 5.1e-91 338.6 336 57.4
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 6.7e-91 338.2 321 59.8
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 6.7e-91 338.2 296 62.5
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 8.7e-91 337.8 325 59.4
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 1.5e-90 337.0 318 61.0
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 2.5e-90 336.3 288 62.8
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 4.3e-90 335.5 285 63.5
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 7.4e-90 334.7 326 57.1
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 7.4e-90 334.7 352 55.4
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 6.2e-89 331.6 317 59.0
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.4e-88 330.5 295 60.3
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.4e-88 330.5 312 59.0
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 1.4e-88 330.5 304 59.5
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.4e-88 329.7 316 58.5
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 4.0e-88 328.9 311 57.2
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 1.5e-87 327.0 306 58.8
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 1.5e-87 327.0 295 60.7
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 5.8e-87 325.1 311 59.5
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 2.2e-86 323.2 313 57.5
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 2.2e-86 323.2 362 52.5
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 8.4e-86 321.2 288 61.8
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 2.5e-85 319.7 307 56.4
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 5.5e-85 318.5 296 59.5
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 7.1e-85 318.2 360 52.8
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 1.6e-84 317.0 294 59.5
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 2.1e-84 316.6 301 56.8
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 1.3e-83 313.9 257 63.4
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.1e-82 310.8 244 63.1
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.3e-82 309.3 327 55.0
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.3e-82 309.3 332 55.1
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 4.3e-82 308.9 238 66.8
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 9.7e-82 307.8 325 56.3
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 9.7e-82 307.8 295 56.6
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 1.6e-81 307.0 299 57.5
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 4.8e-81 305.4 315 55.9
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.1e-80 302.8 284 57.7
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 4.1e-80 302.4 302 54.6
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 1.2e-79 300.8 320 53.8
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.2e-79 300.8 309 54.7
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 7.7e-79 298.1 292 56.8
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 1.3e-78 297.4 271 58.7
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 8.5e-78 294.7 298 56.0
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 1.1e-77 294.3 313 51.8
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 1.9e-77 293.5 267 58.4
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.9e-77 293.5 264 59.5
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 1.9e-77 293.5 312 51.6
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 7.2e-77 291.6 272 58.8
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 1.2e-76 290.8 206 71.4
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.6e-76 290.4 219 64.8
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.6e-76 289.3 274 56.6
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-75 287.3 287 56.4
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 1.1e-74 284.3 280 55.0
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 2.0e-74 283.5 322 51.2
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 1.3e-73 280.8 202 66.8
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 2.2e-73 280.0 310 54.5
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.4e-69 267.3 297 51.5
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 3.6e-68 262.7 357 45.7
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.2e-62 243.4 192 63.0
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 2.7e-60 236.5 281 46.6
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 6.7e-59 231.9 152 73.7
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 2.0e-58 230.3 182 63.2
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.6e-58 229.9 211 55.0
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 2.2e-57 226.9 280 48.6
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 2.2e-57 226.9 260 49.6
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 2.9e-54 216.5 145 73.8
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 5.0e-54 215.7 220 56.8
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.3e-49 201.1 211 50.7
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 4.1e-48 196.1 241 46.1
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 5.9e-47 192.2 220 51.8
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 1.1e-45 188.0 229 45.4
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 5.7e-42 175.6 216 46.3
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 5.7e-42 175.6 216 46.3
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 8.3e-41 171.8 259 42.5
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 2.0e-39 167.2 223 42.2
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 4.1e-32 142.9 182 42.9
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 5.0e-30 136.0 84 78.6
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 2.0e-26 124.0 94 69.1
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 4.4e-26 122.9 214 35.5
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.4e-24 117.9 195 39.0
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.9e-13 80.9 78 57.7
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 2.4e-08 63.9 241 22.8


User provided reference genes

Program Settings