Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 8.5e-118 427.6 313 100.0
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 3.5e-55 219.5 324 55.6
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 3.9e-54 216.1 316 52.5
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 8.7e-54 214.9 318 56.6
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.1e-51 208.0 324 43.8
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 5.3e-51 205.7 330 57.3
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 5.3e-51 205.7 327 52.9
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 9.0e-51 204.9 316 60.1
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.7e-49 200.7 317 60.6
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 4.9e-49 199.1 351 43.0
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 8.4e-49 198.4 308 56.2
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.4e-48 197.6 316 62.7
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 1.2e-47 194.5 329 49.5
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 1.0e-46 191.4 307 53.4
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 1.7e-46 190.7 315 58.1
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 3.0e-46 189.9 336 43.8
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 3.9e-46 189.5 312 45.8
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.9e-46 189.5 315 45.1
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 8.7e-46 188.3 116 76.7
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.5e-45 187.6 316 59.5
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 1.5e-45 187.6 342 47.1
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 3.3e-45 186.4 318 50.0
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 4.3e-45 186.0 318 55.0
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 4.3e-45 186.0 339 57.8
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.3e-45 185.3 315 45.1
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 2.1e-44 183.7 341 52.8
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.4e-43 181.0 319 51.1
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 1.4e-43 181.0 149 65.1
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.8e-43 180.6 131 67.2
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 2.4e-43 180.3 331 54.7
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 4.0e-43 179.5 125 71.2
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 9.0e-43 178.3 324 46.6
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 1.2e-42 177.9 345 49.3
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 1.5e-42 177.6 329 45.3
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 1.5e-42 177.6 341 51.0
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 2.0e-42 177.2 237 55.3
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 2.6e-42 176.8 334 56.3
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 3.4e-42 176.4 316 56.0
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 4.5e-42 176.0 132 65.9
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 4.5e-42 176.0 343 54.5
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 4.5e-42 176.0 116 71.6
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 4.5e-42 176.0 232 56.5
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 4.5e-42 176.0 314 48.1
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 5.8e-42 175.6 311 57.9
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 7.6e-42 175.3 132 66.7
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.6e-42 175.3 135 68.1
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 9.9e-42 174.9 320 56.9
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 1.3e-41 174.5 351 43.6
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.3e-41 174.5 136 67.6
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 1.7e-41 174.1 130 70.0
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 2.2e-41 173.7 129 66.7
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.9e-41 173.3 136 66.9
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.9e-41 173.3 315 48.9
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 3.8e-41 172.9 322 48.1
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 4.9e-41 172.6 336 50.6
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 6.4e-41 172.2 334 45.8
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 6.4e-41 172.2 133 64.7
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 1.1e-40 171.4 133 65.4
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 1.1e-40 171.4 125 67.2
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 1.9e-40 170.6 135 65.2
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.9e-40 170.6 334 48.2
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.9e-40 170.6 240 54.2
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 2.4e-40 170.2 314 58.0
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 3.2e-40 169.9 342 43.6
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 3.2e-40 169.9 131 61.8
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 3.2e-40 169.9 312 48.4
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 4.2e-40 169.5 135 64.4
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 4.2e-40 169.5 310 44.2
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 4.2e-40 169.5 129 65.1
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 4.2e-40 169.5 124 66.9
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 9.3e-40 168.3 318 45.6
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.6e-39 167.5 313 47.6
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 2.1e-39 167.2 341 52.5
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 3.5e-39 166.4 137 61.3
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 3.5e-39 166.4 137 61.3
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 3.5e-39 166.4 137 61.3
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 3.5e-39 166.4 137 61.3
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 4.6e-39 166.0 127 63.0
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 4.6e-39 166.0 310 47.7
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.0e-38 164.9 116 63.8
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.3e-38 164.5 330 38.5
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.3e-38 164.5 145 63.4
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 2.3e-38 163.7 127 64.6
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.9e-38 162.9 113 66.4
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 5.1e-38 162.5 358 49.4
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 5.1e-38 162.5 329 46.5
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.7e-38 162.2 320 47.2
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 8.7e-38 161.8 349 48.4
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 1.1e-37 161.4 341 58.4
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.5e-37 161.0 116 69.8
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.9e-37 160.6 316 48.4
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 2.5e-37 160.2 314 50.6
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 3.3e-37 159.8 119 65.5
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 3.3e-37 159.8 405 51.1
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.3e-37 159.5 139 62.6
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 4.3e-37 159.5 109 69.7
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 4.3e-37 159.5 116 70.7
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 7.4e-37 158.7 305 50.2
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 9.6e-37 158.3 122 66.4
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 1.6e-36 157.5 350 50.3
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.6e-36 157.5 139 62.6
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 2.1e-36 157.1 317 39.7
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 2.1e-36 157.1 118 62.7
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 3.7e-36 156.4 322 46.6
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 6.2e-36 155.6 137 61.3
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 8.1e-36 155.2 121 66.1
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 8.1e-36 155.2 145 60.0
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 1.1e-35 154.8 321 52.0
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 1.8e-35 154.1 310 44.5
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 2.4e-35 153.7 127 63.0
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.4e-35 153.7 318 47.2
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.4e-35 153.7 318 47.2
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 2.4e-35 153.7 318 47.2
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.4e-35 153.7 318 47.2
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 2.4e-35 153.7 297 40.7
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 4.0e-35 152.9 117 70.1
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 5.3e-35 152.5 124 63.7
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 5.3e-35 152.5 325 40.9
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.0e-35 151.8 131 62.6
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 1.5e-34 151.0 130 60.0
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.5e-34 151.0 127 62.2
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 2.6e-34 150.2 143 57.3
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.6e-34 150.2 127 62.2
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 7.6e-34 148.7 330 47.3
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 7.6e-34 148.7 139 55.4
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.3e-33 147.9 326 54.0
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.7e-33 147.5 108 65.7
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 1.7e-33 147.5 122 55.7
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 2.9e-33 146.7 109 64.2
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 2.9e-33 146.7 120 61.7
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 1.1e-32 144.8 126 56.3
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 1.4e-32 144.4 107 63.6
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.2e-32 142.9 118 61.9
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 7.1e-32 142.1 110 64.5
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 7.1e-32 142.1 111 59.5
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 1.6e-31 141.0 110 65.5
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 2.1e-31 140.6 111 63.1
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 2.1e-31 140.6 132 60.6
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 2.1e-31 140.6 120 60.8
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 4.6e-31 139.4 108 62.0
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 6.0e-31 139.0 127 56.7
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 1.0e-30 138.3 120 60.8
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 1.0e-30 138.3 129 53.5
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 2.3e-30 137.1 107 61.7
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 3.0e-30 136.7 135 60.0
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 8.7e-30 135.2 129 57.4
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-29 134.8 113 62.8
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 2.5e-29 133.7 114 62.3
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 3.3e-29 133.3 114 62.3
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 3.3e-29 133.3 114 62.3
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 3.3e-29 133.3 114 62.3
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 5.6e-29 132.5 147 53.1
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 7.4e-29 132.1 137 53.3
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 9.6e-29 131.7 149 50.3
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 9.6e-29 131.7 130 53.8
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 6.2e-28 129.0 135 51.1
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 8.2e-28 128.6 96 68.8
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 2.4e-27 127.1 148 52.0
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 3.1e-27 126.7 110 58.2
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.5e-26 124.4 137 55.5
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 2.0e-26 124.0 119 54.6
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 3.4e-26 123.2 112 56.2
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 2.2e-25 120.6 128 55.5
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 6.5e-25 119.0 114 53.5
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 6.5e-25 119.0 90 60.0
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 1.9e-24 117.5 126 54.0
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 2.7e-23 113.6 111 55.0
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 1.5e-18 97.8 125 46.4
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 7.9e-15 85.5 114 44.7
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 1.0e-14 85.1 109 44.0
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 3.9e-14 83.2 117 44.4
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 2.0e-13 80.9 138 39.1
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 3.3e-13 80.1 125 42.4
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.7e-13 79.3 69 56.5
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 6.3e-12 75.9 125 42.4
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.0e-10 70.9 115 40.9
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 7.7e-10 68.9 115 40.9
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.7e-09 67.8 116 38.8
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 6.5e-09 65.9 108 39.8
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 1.6e-07 61.2 241 43.2
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.1e-07 60.8 114 35.1
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 4.7e-07 59.7 45 53.3


User provided reference genes

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