Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 4.4e-189 664.5 335 100.0
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 1.8e-153 546.2 335 80.9
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 3.6e-138 495.4 334 76.3
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 1.3e-137 493.4 334 76.3
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.8e-137 493.0 330 75.8
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.1e-136 490.3 334 76.0
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 4.3e-136 488.4 333 76.3
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 9.1e-134 480.7 334 74.0
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 4.5e-133 478.4 333 73.9
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.3e-132 476.9 336 73.8
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.7e-132 476.5 335 73.4
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 5.0e-132 474.9 329 74.2
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 7.2e-131 471.1 335 72.5
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 9.4e-131 470.7 335 72.5
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 1.0e-129 467.2 335 74.6
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 5.1e-129 464.9 335 71.6
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 1.1e-128 463.8 337 70.6
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 9.7e-128 460.7 335 71.0
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 1.3e-127 460.3 334 73.4
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.2e-127 459.5 329 72.0
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.0e-125 453.0 335 70.1
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 5.9e-125 451.4 329 71.1
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 5.9e-125 451.4 333 70.0
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 5.9e-125 451.4 336 71.7
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.7e-124 449.9 340 69.7
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 2.9e-124 449.1 334 68.9
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 1.9e-123 446.4 334 70.4
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 2.3e-121 439.5 332 70.2
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 6.7e-121 438.0 329 70.2
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 1.5e-120 436.8 334 68.0
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 2.0e-120 436.4 328 66.8
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 7.4e-120 434.5 333 67.0
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 9.7e-120 434.1 333 69.1
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 1.7e-119 433.3 334 65.6
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.7e-119 433.3 334 68.0
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 2.2e-119 433.0 339 69.0
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 2.8e-119 432.6 336 69.0
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 8.2e-119 431.0 334 69.8
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 1.1e-118 430.6 335 69.6
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 1.8e-118 429.9 330 66.4
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 2.4e-118 429.5 331 67.4
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 2.4e-118 429.5 336 65.8
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.1e-118 429.1 345 67.0
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 3.1e-118 429.1 333 67.3
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 4.1e-118 428.7 334 65.0
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 5.3e-118 428.3 335 66.9
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 1.6e-117 426.8 331 65.6
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 1.6e-117 426.8 335 66.6
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 2.0e-117 426.4 335 69.0
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 5.9e-117 424.9 328 70.4
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 5.9e-117 424.9 335 68.7
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 5.9e-117 424.9 333 68.2
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 7.7e-117 424.5 335 69.0
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.0e-116 424.1 335 65.4
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 3.8e-116 422.2 333 65.2
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 5.0e-116 421.8 333 65.8
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 6.5e-116 421.4 333 67.3
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 6.5e-116 421.4 334 67.1
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 8.5e-116 421.0 335 68.4
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 8.5e-116 421.0 333 65.8
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 8.5e-116 421.0 333 65.8
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 3.2e-115 419.1 335 66.6
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 4.2e-115 418.7 340 64.1
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 5.5e-115 418.3 331 68.6
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 5.5e-115 418.3 329 66.0
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.6e-114 416.8 334 66.5
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.6e-114 416.8 334 66.5
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.0e-113 414.1 333 67.6
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 1.0e-113 414.1 332 65.4
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 1.8e-113 413.3 362 60.2
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 3.0e-113 412.5 335 66.9
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 2.0e-112 409.8 333 67.3
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 3.7e-111 405.6 334 63.8
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 1.1e-110 404.1 374 59.9
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.4e-110 403.7 373 60.3
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 2.4e-110 402.9 367 58.9
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 3.1e-110 402.5 358 59.5
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 5.3e-110 401.7 335 63.6
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 3.5e-109 399.1 336 62.5
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 4.5e-109 398.7 273 72.9
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.7e-108 396.7 287 72.8
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 2.0e-104 383.3 335 60.3
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 9.8e-104 380.9 274 72.6
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 4.8e-103 378.6 250 75.6
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.2e-101 374.0 284 66.9
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 2.7e-101 372.9 264 70.5
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 2.7e-101 372.9 335 60.9
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 6.5e-100 368.2 289 68.5
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 1.2e-98 364.0 272 70.6
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 1.2e-98 364.0 287 65.5
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 4.4e-96 355.5 331 55.9
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 5.4e-94 348.6 283 63.6
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 7.8e-93 344.7 288 67.7
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 2.9e-92 342.8 321 57.9
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 3.3e-91 339.3 341 54.5
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 3.0e-89 332.8 272 63.6
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 6.6e-84 315.1 249 61.4
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 6.2e-82 308.5 267 62.2
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 5.4e-78 295.4 249 57.8
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 3.0e-76 289.7 262 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.1e-73 281.2 290 49.7
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 1.4e-73 280.8 222 70.3
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 3.2e-70 269.6 272 55.1
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 5.2e-65 252.3 252 52.0
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 2.0e-64 250.4 221 65.6
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 1.2e-61 241.1 225 63.6
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.2e-61 241.1 157 77.7
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 2.7e-61 240.0 225 63.6
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 3.0e-60 236.5 216 54.2
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 7.6e-56 221.9 162 75.3
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.5e-48 197.6 235 51.9
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 5.8e-48 195.7 194 59.3
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.9e-44 183.0 203 57.6
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 1.4e-38 164.5 278 37.4
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.9e-38 164.1 265 38.1
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 1.8e-20 104.4 88 59.1
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 1.7e-18 97.8 194 33.0
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 4.5e-16 89.7 65 61.5
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 6.3e-10 69.3 37 81.1
MD13G1066100 Malus domestica HOM05D002318 ORTHO05D008744 4.1e-09 66.6 76 47.4
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.2e-08 65.1 56 60.7
AagrBONN_evm.TU.Sc2ySwM_117.310 Anthoceros agrestis HOM05D020303 ORTHO05D021299 1.4e-06 58.2 117 29.9
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 5.5e-06 56.2 70 40.0


User provided reference genes

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