Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 7.8e-269 929.9 466 100.0
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.3e-198 695.3 451 78.3
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.5e-190 669.1 472 73.3
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.3e-190 668.7 471 73.5
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.6e-189 665.2 472 72.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.0e-188 663.7 471 72.0
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-188 661.8 471 71.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 2.0e-187 659.4 470 71.9
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 4.4e-187 658.3 470 72.1
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.5e-187 657.5 471 71.3
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.3e-186 656.8 466 73.0
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.2e-186 656.0 466 72.5
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 8.3e-186 654.1 477 69.4
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.4e-185 652.5 465 71.4
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.2e-185 652.1 469 71.0
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 9.2e-185 650.6 470 71.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.0e-184 649.4 470 70.2
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.6e-184 648.3 479 69.1
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.6e-183 644.4 466 71.2
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-182 643.7 466 71.2
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.5e-182 643.3 474 70.0
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.3e-182 641.0 466 70.8
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.3e-182 641.0 464 71.8
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.2e-181 640.2 471 69.0
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.2e-181 640.2 472 69.1
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-181 639.8 464 71.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.6e-181 639.8 471 69.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.8e-181 639.0 474 68.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-180 636.3 464 71.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.3e-180 636.0 469 69.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.0e-179 632.9 484 67.1
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.4e-179 632.1 478 67.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 5.4e-177 624.8 465 68.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 6.0e-176 621.3 476 67.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 7.8e-176 620.9 472 67.6
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 8.6e-175 617.5 467 67.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.1e-174 617.1 472 67.2
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.5e-174 616.7 456 67.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.9e-174 616.3 472 67.8
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.6e-174 614.8 451 69.6
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.3e-174 614.4 472 67.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.2e-173 613.6 470 67.0
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.1e-173 612.8 473 67.2
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.6e-173 612.1 476 67.0
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.6e-173 612.1 470 65.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.6e-173 612.1 465 67.3
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.2e-173 611.3 458 67.7
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.4e-172 610.1 471 66.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 5.2e-172 608.2 473 65.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 8.9e-172 607.4 471 64.3
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.4e-171 605.5 458 67.0
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.3e-170 603.6 452 67.3
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-169 600.5 480 64.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 9.2e-169 597.4 471 66.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.7e-168 595.9 470 64.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.3e-167 592.8 478 65.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.9e-166 589.7 471 65.6
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.6e-165 585.5 472 63.6
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 3.6e-165 585.5 460 66.5
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.4e-161 571.6 467 63.0
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.6e-160 570.1 473 63.2
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.6e-159 564.7 467 62.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 9.6e-158 560.8 472 60.4
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.6e-157 560.1 465 61.9
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.6e-157 560.1 464 63.4
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.4e-156 556.2 457 61.9
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 4.4e-155 552.0 471 60.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 6.4e-154 548.1 469 60.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.4e-154 548.1 455 60.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 8.4e-154 547.7 455 60.9
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.1e-153 547.4 469 60.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.4e-153 545.0 462 59.1
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.2e-152 543.9 456 61.2
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 5.1e-151 538.5 470 59.8
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.1e-149 533.1 454 58.6
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 3.6e-149 532.3 465 61.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.4e-148 529.6 473 58.8
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.3e-148 528.5 465 59.8
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.3e-148 528.5 465 60.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.5e-147 525.4 460 60.4
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.3e-146 523.9 477 58.1
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.9e-146 522.7 469 59.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.8e-146 522.3 468 58.5
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.4e-146 521.5 465 61.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 8.4e-146 521.2 465 58.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.4e-146 521.2 466 57.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-145 520.8 461 59.0
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.4e-145 519.6 471 58.8
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.4e-145 519.6 474 57.0
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.4e-145 519.6 466 58.6
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-145 519.2 462 59.1
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 3.2e-145 519.2 472 57.2
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 5.4e-145 518.5 461 58.8
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-144 517.3 461 58.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-144 517.3 462 59.5
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.7e-144 516.2 465 58.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 4.6e-144 515.4 462 59.5
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.0e-143 514.2 460 59.1
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.9e-143 512.3 464 56.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.9e-143 512.3 475 56.8
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.1e-143 511.9 431 59.6
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 5.1e-143 511.9 471 55.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.9e-142 510.0 483 54.9
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 9.6e-142 507.7 462 58.9
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 9.6e-142 507.7 459 59.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-141 507.3 404 61.4
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 2.1e-141 506.5 462 58.7
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.8e-141 506.1 468 55.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.7e-141 505.8 476 57.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 5.3e-140 501.9 462 56.1
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-139 499.2 460 56.5
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-139 499.2 460 56.3
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.4e-139 499.2 460 56.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.6e-139 498.0 462 58.0
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.6e-139 498.0 462 58.0
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 7.6e-139 498.0 460 56.3
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.4e-137 493.8 461 57.5
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.5e-137 493.0 460 57.8
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.6e-136 490.3 460 57.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.6e-136 488.8 463 56.4
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-135 486.5 463 55.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.3e-135 486.5 463 55.9
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-135 486.1 461 56.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-135 485.7 463 56.2
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.7e-134 481.9 460 55.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 9.6e-134 481.1 459 56.2
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.1e-132 477.6 427 55.5
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 3.1e-132 476.1 457 52.5
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.3e-130 470.7 474 52.5
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 2.2e-130 469.9 454 54.6
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 5.0e-130 468.8 473 53.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 3.2e-129 466.1 426 54.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.6e-128 463.8 387 58.1
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.1e-128 463.4 467 53.1
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.8e-127 460.3 457 53.0
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.3e-126 456.1 471 51.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.2e-125 453.4 478 51.5
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.4e-124 450.7 313 73.2
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.4e-124 450.7 313 73.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 3.4e-123 446.0 471 50.1
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.2e-120 437.6 458 48.7
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.7e-120 436.4 473 49.7
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.7e-119 431.8 471 48.6
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 8.8e-119 431.4 466 49.8
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.3e-118 429.5 477 48.4
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.1e-110 404.4 436 48.6
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.3e-109 401.0 432 48.4
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-101 374.4 465 46.7
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.3e-95 353.6 438 43.2
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.0e-95 353.2 438 41.8
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.2e-95 352.4 438 42.7
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-94 351.3 438 42.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-90 336.3 462 45.7
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.5e-90 335.1 429 43.1
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 7.5e-86 322.0 336 53.9
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.5e-73 281.2 198 70.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.2e-69 267.3 340 42.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.0e-66 256.9 216 60.6
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-62 243.4 205 58.5
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 4.4e-62 243.0 205 58.5
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.6e-56 224.6 210 57.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-49 201.1 165 62.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.3e-45 188.3 220 48.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 9.3e-44 182.2 271 42.4
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-33 146.0 278 38.1
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 4.9e-29 133.3 130 48.5
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 9.3e-20 102.4 94 56.4
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.5e-17 94.4 90 55.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 4.1e-15 87.0 92 52.2
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.1e-11 74.7 99 42.4
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.9e-09 68.2 176 34.7
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.5e-09 67.8 65 52.3
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 3.1e-07 60.8 60 60.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-06 57.4 29 79.3


User provided reference genes

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