Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 6.6e-301 1036.6 515 100.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 5.8e-257 890.6 504 86.3
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.9e-245 851.3 506 81.6
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.2e-243 845.5 504 80.6
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.4e-242 842.8 504 80.6
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 6.5e-240 833.9 506 80.0
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 6.7e-237 823.9 504 78.8
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 9.7e-236 820.1 504 78.6
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 3.1e-234 815.1 504 77.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.2e-233 813.1 504 77.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.5e-233 812.8 503 77.1
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.5e-233 812.8 503 77.3
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.0e-233 812.4 504 78.2
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.3e-232 809.7 503 77.1
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.7e-232 809.3 504 77.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.5e-231 805.4 488 79.5
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 5.5e-231 804.3 481 80.5
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 7.2e-231 803.9 483 79.7
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.6e-230 802.7 507 76.7
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.7e-230 802.0 504 77.4
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.6e-230 801.6 504 76.8
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 4.7e-230 801.2 478 80.8
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.9e-229 798.1 504 76.6
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 5.1e-229 797.7 482 79.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.5e-228 796.2 504 76.0
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.5e-228 796.2 506 75.3
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.2e-227 792.3 506 75.5
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 2.8e-227 792.0 506 76.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.4e-226 789.6 484 78.3
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 3.1e-226 788.5 507 76.7
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.7e-224 782.7 506 74.1
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 2.9e-224 781.9 505 76.0
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 5.0e-224 781.2 508 73.6
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.9e-223 779.2 507 74.2
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.9e-223 779.2 506 73.7
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.5e-223 778.9 507 75.0
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.6e-222 776.2 506 73.5
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.6e-222 776.2 506 75.7
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.6e-222 775.0 504 75.2
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 3.9e-221 771.5 478 77.2
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.2e-221 771.2 480 77.5
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.1e-220 770.0 503 74.2
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 2.6e-220 768.8 478 77.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 5.7e-220 767.7 506 73.1
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.8e-219 764.6 504 73.2
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.8e-219 764.6 507 73.6
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 8.2e-219 763.8 473 77.6
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 8.2e-219 763.8 477 76.9
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.4e-218 763.1 468 77.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.4e-218 762.3 504 73.2
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.1e-218 761.5 506 72.9
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 4.1e-218 761.5 504 73.2
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 7.0e-218 760.8 509 73.3
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 9.1e-218 760.4 504 72.8
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.6e-217 759.6 507 72.4
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 2.0e-217 759.2 506 72.9
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.5e-217 758.4 504 73.4
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 7.7e-217 757.3 506 72.1
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 2.2e-216 755.7 479 76.2
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.9e-215 752.7 504 73.4
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.5e-215 751.1 478 75.5
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.1e-214 749.2 503 71.4
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 6.1e-214 747.7 503 71.6
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.4e-213 746.5 506 70.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 3.0e-213 745.3 503 72.0
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 3.3e-212 741.9 506 70.9
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 9.7e-212 740.3 506 70.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.7e-211 739.6 503 71.6
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.2e-211 739.2 478 74.3
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 3.7e-211 738.4 437 80.8
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 3.7e-211 738.4 507 70.2
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.1e-210 735.3 484 72.1
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 7.0e-210 734.2 508 71.9
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 2.0e-209 732.6 507 68.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 7.7e-209 730.7 485 72.2
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.3e-208 729.9 468 75.9
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 6.5e-208 727.6 485 72.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.5e-208 727.6 485 71.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.5e-207 725.7 480 72.1
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.2e-207 725.3 485 71.8
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 7.2e-207 724.2 488 73.2
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 9.4e-207 723.8 472 72.2
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.0e-205 718.8 476 71.0
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.5e-204 716.5 476 70.6
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 7.5e-204 714.1 480 70.4
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 7.5e-204 714.1 480 70.4
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 7.5e-204 714.1 480 70.4
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 4.8e-203 711.4 439 75.9
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 5.4e-202 708.0 439 77.2
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.0e-202 707.6 439 76.3
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 3.8e-200 701.8 504 70.4
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 9.5e-199 697.2 472 70.6
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 4.7e-198 694.9 491 67.2
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 2.8e-195 685.6 439 75.4
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.3e-192 676.8 467 69.6
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.9e-192 675.6 481 68.6
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 3.8e-192 675.2 497 65.6
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.0e-192 674.9 401 80.5
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.1e-191 673.7 473 70.6
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.5e-191 673.3 476 66.4
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 8.9e-189 664.1 482 66.8
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 8.9e-189 664.1 479 66.4
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 4.4e-188 661.8 471 66.7
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.7e-184 649.8 418 74.2
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.6e-182 643.3 389 79.2
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.8e-182 642.5 450 68.0
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 6.4e-179 631.3 485 68.0
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.4e-178 630.2 481 65.7
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 7.8e-177 624.4 468 66.2
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.6e-174 616.7 466 64.4
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.6e-169 600.1 437 67.5
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-156 557.0 487 56.9
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.4e-154 550.4 474 56.5
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 7.6e-148 528.1 463 54.2
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 9.9e-148 527.7 313 83.1
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 2.2e-147 526.6 342 76.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 2.2e-147 526.6 483 53.8
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.2e-145 520.8 341 74.2
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.8e-144 516.9 323 77.4
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.7e-131 473.8 479 50.1
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.2e-129 467.6 292 79.1
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.8e-128 463.8 292 78.1
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.8e-123 446.0 471 50.1
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 3.6e-121 439.5 322 66.5
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.0e-115 421.4 380 57.6
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 6.1e-105 385.6 250 72.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 6.5e-99 365.5 605 37.7
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.3e-91 341.3 533 39.8
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 6.6e-83 312.4 454 41.4
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.8e-80 304.3 458 41.0
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.4e-71 273.1 157 78.3
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 3.7e-54 216.9 213 51.2
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 1.9e-50 204.5 240 49.2
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.6e-49 201.4 177 58.2
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.0e-43 180.6 316 38.3
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.4e-40 171.0 108 81.5
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.4e-32 145.2 100 69.0
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.4e-32 145.2 237 38.8
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 5.3e-32 143.3 119 59.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.4e-29 134.4 87 71.3
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 2.8e-25 120.9 76 71.1
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 3.2e-21 107.5 68 82.4
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.7e-20 104.4 67 67.2
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 5.7e-18 96.7 89 53.9
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 1.7e-06 58.5 38 68.4


User provided reference genes

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