Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.7e-304 1046.6 541 100.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 6.2e-233 810.8 511 79.5
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.4e-229 798.9 511 76.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 7.3e-226 787.3 517 77.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.4e-222 773.9 540 71.7
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.5e-220 768.5 510 76.5
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 6.6e-219 764.2 518 73.0
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.5e-218 763.1 520 71.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 3.3e-218 761.9 514 74.7
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.2e-217 757.7 517 74.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 8.1e-217 757.3 519 72.3
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.5e-215 753.1 517 72.9
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.0e-215 752.7 519 72.1
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.4e-215 751.5 513 74.5
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.2e-213 745.0 508 74.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.0e-211 740.3 542 69.7
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.5e-210 735.7 486 75.5
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 5.6e-210 734.6 523 71.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 7.3e-210 734.2 524 68.7
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 9.6e-210 733.8 523 69.6
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.3e-209 733.4 521 71.8
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.9e-208 727.6 518 70.8
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 6.9e-208 727.6 551 69.3
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.5e-207 724.9 520 70.2
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 7.6e-207 724.2 520 69.4
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.4e-206 720.7 520 69.8
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.1e-205 720.3 599 62.4
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.2e-204 716.8 541 68.4
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.2e-204 716.8 518 69.7
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-204 716.1 520 69.0
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.5e-204 715.3 519 70.7
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 3.5e-204 715.3 542 66.4
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 6.7e-203 711.1 504 69.6
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 8.7e-203 710.7 538 66.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.1e-202 710.3 528 69.3
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.5e-202 709.1 514 69.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.6e-202 708.0 518 69.7
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 9.6e-202 707.2 542 66.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.2e-201 704.5 519 68.4
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 6.2e-201 704.5 517 67.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 3.1e-200 702.2 519 69.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.6e-199 699.1 544 66.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.7e-198 696.4 541 66.0
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.9e-198 695.7 522 67.4
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.2e-197 691.8 515 67.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.7e-196 689.1 532 67.9
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.6e-196 688.3 521 66.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.8e-195 686.4 521 67.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.7e-195 684.5 557 61.8
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.7e-195 684.1 576 60.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.4e-194 681.0 520 68.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.1e-193 679.5 557 61.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 8.1e-193 677.6 540 63.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.1e-193 677.6 520 67.9
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.1e-192 677.2 520 67.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.1e-192 675.6 558 62.0
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 5.3e-192 674.9 563 60.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.5e-191 673.3 563 63.1
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.2e-190 669.5 467 69.2
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.4e-190 667.5 548 63.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.1e-189 667.2 597 61.5
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.9e-189 666.4 510 64.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.1e-188 662.9 519 64.9
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.3e-186 655.6 523 63.9
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 5.7e-186 654.8 552 61.4
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.6e-185 653.3 553 60.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.6e-183 646.0 516 64.0
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.5e-182 641.3 530 63.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 8.5e-182 641.0 554 60.5
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 6.1e-180 634.8 545 61.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.3e-179 633.6 514 63.2
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 6.7e-179 631.3 451 68.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.1e-178 630.6 545 61.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.4e-178 627.9 521 63.3
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.2e-177 626.3 515 60.8
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.2e-177 626.3 517 61.9
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.8e-177 625.9 521 63.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 6.9e-176 621.3 556 57.0
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.9e-174 615.9 557 60.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.1e-173 614.0 543 59.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-173 614.0 545 61.3
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.9e-173 613.2 543 60.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 5.5e-173 611.7 545 60.9
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.6e-172 608.6 538 60.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.3e-171 606.3 513 60.8
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 3.0e-171 605.9 545 60.4
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-170 604.0 516 62.2
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.3e-169 600.5 480 62.9
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.3e-169 598.2 515 60.8
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 3.1e-168 595.9 551 58.6
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.0e-166 590.9 539 58.6
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.2e-165 585.5 557 56.2
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 6.7e-163 578.2 540 55.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 8.8e-163 577.8 555 53.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.3e-161 573.9 541 56.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.2e-161 573.2 587 53.7
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 3.7e-161 572.4 521 58.0
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-160 570.9 545 58.3
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.1e-160 568.9 559 52.6
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.6e-159 567.0 525 56.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 5.9e-159 565.1 497 57.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.8e-158 562.4 358 72.3
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 7.2e-157 558.1 435 65.3
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.0e-155 552.4 526 56.3
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.0e-154 550.1 526 56.8
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.2e-153 546.6 522 55.0
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 7.7e-151 538.1 365 68.8
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.0e-150 537.7 400 65.8
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.0e-147 527.7 515 53.4
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.2e-145 520.0 490 58.0
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 4.1e-144 515.8 510 51.8
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.1e-144 515.8 521 52.6
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.7e-143 513.1 526 52.3
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.9e-142 509.6 525 52.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 6.1e-140 501.9 486 54.1
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.5e-138 497.3 299 76.6
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.8e-137 493.0 527 52.4
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.2e-135 487.6 517 50.5
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.0e-134 484.6 339 66.7
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.2e-132 477.6 470 53.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.0e-131 474.6 409 57.5
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 2.4e-128 463.4 322 67.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.2e-123 445.7 267 76.8
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.3e-121 441.0 312 68.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.4e-120 436.8 355 57.2
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.1e-120 436.0 361 56.2
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.0e-119 433.7 558 42.5
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.0e-119 433.7 597 42.2
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.5e-119 433.0 359 56.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 4.6e-119 432.6 549 43.7
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-118 430.6 559 42.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.7e-118 430.6 559 42.6
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-117 427.2 574 43.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.6e-116 424.1 492 47.8
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-116 423.7 571 42.7
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.8e-116 423.3 347 57.6
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 4.7e-116 422.5 349 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.5e-114 417.5 525 42.7
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.4e-114 416.4 607 39.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.4e-114 416.0 279 66.7
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 2.2e-113 413.7 553 42.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 2.2e-113 413.7 553 42.1
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.9e-112 410.6 561 41.5
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.9e-112 410.6 561 41.5
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.2e-112 409.8 454 48.2
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.3e-109 399.8 419 49.2
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.6e-106 390.2 300 59.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.6e-102 375.6 225 73.8
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 3.6e-100 369.8 460 48.5
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.4e-96 357.1 208 79.8
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.3e-94 351.3 208 77.4
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 9.3e-88 328.6 283 62.9
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.7e-81 307.8 535 39.6
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.5e-79 300.1 298 48.3
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 7.1e-72 275.8 342 49.4
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.2e-68 264.2 528 35.4
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.8e-68 263.8 237 62.0
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.1e-59 235.3 295 47.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 2.4e-59 234.2 569 33.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 6.3e-52 209.5 163 61.3
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 5.3e-43 179.9 133 63.9
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 9.1e-43 179.1 122 68.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 7.7e-42 176.0 283 36.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.0e-38 163.7 101 72.3
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.1e-35 153.7 83 85.5
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.0e-33 149.1 229 40.6
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.3e-30 137.9 81 75.3
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 9.8e-29 132.5 67 91.0
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.9e-25 120.9 65 87.7
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 9.5e-24 115.9 103 48.5
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.6e-23 115.2 94 56.4
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 7.3e-16 89.7 233 31.8
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.1e-15 88.2 232 32.3
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.4e-14 85.5 161 39.1
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.7e-07 60.5 73 47.9
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 8.0e-07 59.7 321 24.6
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 2.3e-06 58.2 394 23.9


User provided reference genes

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