Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.2e-157 560.8 598 100.0
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 2.4e-92 344.0 602 82.9
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 6.9e-92 342.4 608 82.4
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 1.3e-90 338.2 619 80.0
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 3.7e-85 320.1 612 78.8
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 4.8e-85 319.7 602 81.4
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.1e-84 318.5 610 80.2
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.4e-84 318.2 602 81.2
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 5.3e-84 316.2 609 81.0
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 1.7e-82 311.2 608 80.4
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 2.2e-82 310.8 614 79.3
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 6.4e-82 309.3 624 78.0
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.4e-81 307.4 619 79.8
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 7.9e-80 302.4 603 79.8
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.8e-79 301.2 632 76.7
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.9e-78 297.7 621 78.1
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 5.6e-78 296.2 607 77.3
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 7.4e-78 295.8 610 76.6
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.4e-78 295.8 606 79.0
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.4e-78 295.8 606 79.0
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.3e-77 295.0 610 76.2
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 4.8e-77 293.1 621 78.3
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 2.4e-76 290.8 591 69.2
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.4e-76 290.8 610 78.5
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 2.0e-75 287.7 610 59.7
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 3.4e-75 287.0 615 77.2
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.0e-74 285.4 621 77.6
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 2.2e-74 284.3 647 64.6
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 2.5e-73 280.8 617 76.3
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 2.5e-73 280.8 617 76.2
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 9.3e-73 278.9 616 75.5
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 7.9e-72 275.8 608 74.7
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 8.7e-71 272.3 613 78.3
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 1.1e-70 271.9 610 75.7
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.1e-70 271.9 610 75.9
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.5e-70 270.8 615 74.1
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 3.3e-70 270.4 557 81.1
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 4.3e-70 270.0 602 77.7
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 7.4e-70 269.2 620 75.3
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 1.3e-69 268.5 619 75.8
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.6e-69 268.1 610 76.9
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 6.3e-69 266.2 616 77.3
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 6.3e-69 266.2 617 65.0
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.1e-68 265.4 610 77.2
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.4e-68 264.2 635 70.4
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.2e-67 261.9 603 76.3
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.7e-66 258.1 569 78.2
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.2e-66 257.7 569 78.0
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.8e-66 256.9 594 77.6
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 1.6e-64 251.5 535 82.8
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 7.9e-64 249.2 605 76.0
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 1.8e-63 248.1 602 76.4
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.8e-63 248.1 560 79.5
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 3.9e-63 246.9 606 75.9
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.9e-62 244.6 609 75.5
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 3.3e-62 243.8 604 75.3
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 4.3e-62 243.4 561 78.4
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 1.3e-61 241.9 627 73.0
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.3e-61 241.9 243 60.1
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.6e-61 241.5 558 79.2
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.6e-61 241.5 611 74.8
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 3.7e-61 240.4 564 78.0
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 4.8e-61 240.0 657 69.9
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 6.3e-61 239.6 609 74.9
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.4e-60 237.7 613 66.1
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 3.1e-60 237.3 610 74.9
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 1.0e-58 232.3 559 79.2
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.9e-58 230.7 607 74.3
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 8.5e-58 229.2 622 72.2
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 8.5e-58 229.2 608 74.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.4e-57 228.4 610 74.6
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 1.4e-57 228.4 622 72.3
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.4e-57 228.4 665 70.2
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.9e-57 228.0 598 75.1
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 4.2e-57 226.9 598 75.1
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 4.2e-57 226.9 598 75.1
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 7.2e-57 226.1 598 74.9
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 7.2e-57 226.1 598 74.9
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.6e-56 224.9 618 73.1
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 6.1e-56 223.0 612 73.4
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 7.9e-56 222.6 599 61.8
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 1.0e-55 222.2 563 67.5
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.0e-54 218.0 257 56.0
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 2.0e-54 218.0 235 57.0
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 2.6e-54 217.6 582 75.9
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 5.7e-54 216.5 231 55.0
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.3e-53 215.3 228 54.8
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 1.7e-53 214.9 583 75.8
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 6.3e-53 213.0 241 55.2
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 3.1e-52 210.7 182 62.1
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 3.1e-52 210.7 255 51.0
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.7e-50 204.9 236 53.0
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 8.5e-50 202.6 603 71.3
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 5.5e-49 199.9 224 52.2
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 4.7e-48 196.8 210 54.8
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 7.9e-48 196.1 575 71.5
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 5.2e-47 193.4 471 87.7
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 6.7e-47 193.0 478 85.6
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 8.8e-47 192.6 168 60.7
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 2.6e-46 191.0 213 54.0
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.1e-44 185.7 501 80.4
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 3.5e-43 180.6 209 52.2
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 3.2e-41 174.1 209 50.2
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.8e-39 168.3 546 71.1
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 4.8e-37 160.2 588 69.6
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 8.2e-37 159.5 124 66.9
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 3.5e-35 154.1 180 52.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.7e-35 152.9 179 52.0
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.7e-35 152.9 179 52.0
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.0e-34 152.5 548 72.4
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.2e-32 145.6 121 64.5
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 4.5e-27 127.1 242 40.1
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.9e-25 121.7 240 88.8
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.1e-24 118.2 405 68.6
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 8.9e-23 112.8 173 45.1
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.0e-22 111.7 618 65.0
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.5e-17 94.7 64 71.9
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 3.0e-15 87.8 371 60.9
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 6.8e-15 86.7 212 35.4
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 8.9e-15 86.3 227 84.1
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.3e-13 82.4 605 62.8
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.3e-13 82.4 605 62.8
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 2.4e-12 78.2 141 37.6
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 7.0e-12 76.6 457 77.2
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 5.0e-10 70.5 242 75.6
Cpa.g.sc367.5 Carica papaya HOM05D006250 ORTHO05D007107 5.6e-09 67.0 118 42.4
SGA_v2.0_scaffold68G22967 Striga asiatica HOM05D006250 ORTHO05D007107 3.4e-06 57.8 120 39.2


User provided reference genes

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