Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 0.0e+00 1172.1 652 100.0
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.1e-215 752.3 649 68.4
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 4.1e-207 725.3 652 64.7
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.7e-206 721.1 646 65.3
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 1.7e-205 719.9 652 64.7
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 3.3e-196 689.1 664 63.0
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 2.6e-193 679.5 636 64.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 9.8e-193 677.6 632 63.0
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.3e-192 677.2 637 63.3
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 5.6e-188 661.8 671 60.4
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 7.3e-188 661.4 649 60.6
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.4e-186 657.1 651 61.3
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.8e-186 656.8 649 60.2
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.9e-184 649.4 652 60.1
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 6.4e-184 648.3 646 60.7
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.7e-182 642.9 642 56.9
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.3e-181 639.8 666 58.1
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 7.3e-180 634.8 639 60.9
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.6e-179 632.5 663 58.7
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 3.0e-173 612.8 651 55.3
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 1.1e-172 610.9 634 61.2
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 4.7e-171 605.5 653 54.4
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.8e-170 603.6 659 57.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.9e-168 596.3 656 54.9
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.3e-165 586.6 646 53.6
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 3.9e-165 585.9 645 53.5
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 3.9e-165 585.9 643 56.1
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 2.5e-164 583.2 640 55.2
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 5.6e-164 582.0 643 55.5
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.6e-163 580.5 638 55.6
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 2.1e-163 580.1 660 52.6
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 4.0e-162 575.9 628 55.7
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 3.4e-161 572.8 655 53.4
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 4.4e-161 572.4 651 52.4
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.2e-159 565.8 636 53.1
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 4.6e-158 562.4 636 53.3
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 4.6e-158 562.4 651 52.7
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.6e-156 555.4 636 52.4
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 4.8e-155 552.4 674 50.6
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.8e-155 552.4 662 49.4
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-154 551.2 662 50.0
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 3.1e-154 549.7 638 53.3
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 5.3e-154 548.9 581 59.2
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 2.0e-153 547.0 644 55.0
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.4e-153 546.2 663 53.7
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 5.8e-153 545.4 643 55.4
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.4e-151 540.8 635 53.9
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.6e-150 537.3 677 49.2
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.9e-149 532.7 634 49.1
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 8.7e-149 531.6 653 50.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 4.8e-147 525.8 651 52.4
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 6.2e-147 525.4 600 55.2
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 3.4e-145 519.6 656 50.5
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 2.5e-143 513.5 644 54.2
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 3.2e-143 513.1 649 52.1
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 4.2e-143 512.7 652 51.8
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 2.7e-142 510.0 552 56.3
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 5.1e-141 505.8 626 50.5
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.8e-139 500.0 653 48.5
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 6.5e-136 488.8 672 48.4
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.3e-133 480.3 706 45.0
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 3.3e-132 476.5 630 49.4
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 4.8e-131 472.6 650 47.5
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 4.8e-131 472.6 664 45.3
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.1e-130 469.5 639 49.1
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 5.3e-130 469.2 631 48.7
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.2e-129 468.0 659 44.3
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 2.0e-129 467.2 654 48.2
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 2.0e-129 467.2 657 47.3
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.6e-129 466.8 646 49.7
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 1.1e-127 461.5 645 48.7
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 7.2e-127 458.8 639 46.9
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.6e-126 457.6 630 46.7
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.0e-125 454.9 660 47.9
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 3.0e-125 453.4 655 45.3
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 6.7e-125 452.2 638 48.0
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.5e-124 451.1 661 47.0
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.4e-122 444.5 654 47.4
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.4e-122 443.7 646 48.5
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-120 438.0 660 45.0
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 3.8e-120 436.4 499 55.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 5.0e-120 436.0 659 45.8
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 3.9e-117 426.4 621 46.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 4.4e-116 422.9 661 46.1
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.0e-113 414.1 666 43.7
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.0e-112 411.8 566 45.9
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.7e-112 411.0 539 48.2
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.8e-109 401.0 385 63.4
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.1e-108 398.3 491 52.7
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 6.3e-107 392.5 667 40.2
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 2.7e-102 377.1 454 53.7
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 4.7e-102 376.3 644 43.0
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 4.7e-94 349.7 324 56.2
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.4e-93 348.2 306 58.2
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.5e-92 344.7 639 41.9
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 2.0e-92 344.4 346 53.2
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 3.3e-87 327.0 274 58.8
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.6e-86 324.7 538 45.2
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.7e-83 314.7 561 40.3
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.9e-83 313.2 651 37.3
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 1.4e-82 311.6 450 43.6
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.7e-80 304.7 293 55.6
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.3e-79 300.4 551 38.1
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 5.2e-77 293.1 275 54.2
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 1.9e-74 284.6 229 63.3
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.0e-73 281.2 665 33.5
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 6.0e-73 279.6 371 54.2
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.3e-72 277.7 261 56.3
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.5e-71 274.2 245 56.7
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 2.4e-66 257.7 623 33.4
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.5e-65 253.8 396 49.2
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.3e-63 247.3 308 46.4
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 7.3e-63 246.1 658 32.4
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.0e-60 238.0 263 51.3
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.2e-59 234.6 604 33.3
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 4.6e-57 226.9 289 47.1
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.6e-57 226.9 483 39.1
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.0e-56 225.7 275 47.6
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 5.6e-55 219.9 714 31.4
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 8.1e-54 216.1 183 61.7
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-53 215.7 291 48.5
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.2e-51 208.0 434 43.1
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.8e-51 207.2 177 55.9
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.4e-45 188.7 234 49.1
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 9.0e-45 186.0 149 61.1
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.4e-42 178.7 183 47.5
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.3e-40 172.2 407 38.8
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.6e-39 166.8 248 44.8
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.8e-38 164.5 149 55.0
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 3.8e-35 154.1 110 60.9
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 8.4e-35 152.9 119 61.3
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 1.0e-32 146.0 190 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.0e-32 144.4 170 40.0
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 5.1e-32 143.7 187 43.3
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 1.6e-30 138.7 203 43.3
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 2.8e-30 137.9 312 31.1
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 3.1e-29 134.4 265 30.6
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-28 130.6 206 41.3
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 7.6e-28 129.8 260 44.2
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.3e-27 129.0 224 37.1
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 6.5e-27 126.7 267 37.5
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 6.5e-27 126.7 198 39.9
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 6.5e-27 126.7 203 37.4
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 6.5e-27 126.7 198 39.9
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.1e-26 123.2 136 52.2
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 7.1e-26 123.2 171 42.7
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 2.7e-25 121.3 198 36.4
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.7e-25 121.3 123 53.7
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 7.9e-25 119.8 89 56.2
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 1.0e-24 119.4 177 43.5
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.0e-24 119.4 100 65.0
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 9.7e-23 112.8 475 29.7
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 9.7e-23 112.8 548 25.9
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-22 111.3 156 43.6
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 2.4e-21 108.2 293 31.4
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 2.0e-20 105.1 308 28.6
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 5.0e-19 100.5 243 40.7
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 5.0e-19 100.5 259 35.9
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.5e-19 99.8 119 48.7
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 5.5e-18 97.1 212 32.5
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.6e-17 95.5 106 52.8
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 9.7e-15 86.3 109 47.7
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 1.3e-14 85.9 72 62.5
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.5e-12 79.0 84 53.6
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 1.5e-12 79.0 159 36.5
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.0e-12 78.6 81 45.7
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 2.0e-12 78.6 49 79.6
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.6e-12 78.2 173 35.3
QL93p0107_0801 Quercus lobata HOM05D003570 ORTHO05D004207 1.3e-11 75.9 151 40.4
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 2.9e-11 74.7 78 51.3
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 3.8e-11 74.3 168 35.1
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 6.5e-11 73.6 87 47.1
CAN.G149.33 Capsicum annuum HOM05D001546 ORTHO05D015824 1.4e-10 72.4 73 52.1
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 7.2e-10 70.1 116 35.3
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 6.1e-09 67.0 49 63.3
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 1.0e-08 66.2 70 44.3
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 3.9e-08 64.3 116 31.9
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 5.1e-08 63.9 54 57.4
Hund04894 Selenicereus undatus HOM05D003570 ORTHO05D004207 5.1e-08 63.9 68 47.1
BolC4t26886H Brassica oleracea HOM05D003570 ORTHO05D004207 6.7e-08 63.5 51 60.8
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 2.6e-07 61.6 129 31.0
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 4.4e-07 60.8 211 27.5
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 7.4e-07 60.1 211 27.0
CAN.G294.19 Capsicum annuum HOM05D003570 ORTHO05D004207 6.3e-06 57.0 81 50.6


User provided reference genes

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