Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 0.0e+00 1286.9 655 100.0
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.5e-286 989.2 658 75.7
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 9.1e-255 883.6 665 68.4
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 2.7e-251 872.1 656 68.8
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 4.7e-251 871.3 659 66.9
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.3e-248 863.2 654 67.4
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 4.1e-247 858.2 661 66.4
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 5.5e-244 847.8 659 65.6
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 5.7e-241 837.8 660 66.1
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.3e-240 836.6 657 65.0
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.1e-239 832.0 650 65.1
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.7e-235 818.1 647 64.9
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 6.1e-235 817.8 643 65.3
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.8e-231 806.2 662 63.7
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 2.4e-231 805.8 659 63.3
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 5.0e-229 798.1 706 60.5
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 9.5e-220 767.3 661 60.1
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 4.7e-219 765.0 691 59.6
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.0e-218 763.8 658 60.0
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.7e-214 749.2 645 59.4
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 2.3e-213 746.1 668 58.7
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 3.9e-213 745.3 659 59.0
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 9.5e-212 740.7 663 58.4
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 6.2e-211 738.0 662 58.2
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 1.0e-210 737.3 668 58.2
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.2e-209 733.8 662 58.5
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.6e-209 732.6 642 59.2
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 4.4e-209 731.9 663 57.9
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 5.8e-209 731.5 658 58.1
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 5.8e-209 731.5 682 57.5
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 1.7e-208 729.9 665 57.7
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 6.4e-208 728.0 664 57.4
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 1.9e-207 726.5 663 57.6
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.6e-206 723.4 585 65.8
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 8.6e-205 717.6 662 57.3
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.5e-204 716.8 662 57.6
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 4.3e-204 715.3 659 58.3
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.4e-202 710.3 660 56.7
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 8.9e-202 707.6 599 60.1
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 3.4e-201 705.7 660 56.5
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 9.8e-201 704.1 659 57.1
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 2.9e-200 702.6 659 56.1
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 1.4e-199 700.3 659 56.6
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 5.4e-199 698.4 659 55.8
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.2e-198 697.2 665 57.4
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 3.5e-198 695.7 669 57.4
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 1.7e-197 693.3 658 56.2
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 2.3e-197 693.0 667 55.8
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 3.7e-192 675.6 655 55.1
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.4e-191 673.7 595 58.5
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 3.0e-189 666.0 750 50.1
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 3.3e-188 662.5 531 63.8
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.8e-186 656.8 782 48.8
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.5e-185 653.7 665 54.0
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.4e-185 652.5 659 53.7
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 2.9e-184 649.4 662 53.3
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.1e-183 647.5 651 53.5
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 6.0e-182 641.7 657 53.4
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 6.0e-182 641.7 489 66.1
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 6.6e-181 638.3 591 55.2
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 4.3e-180 635.6 659 52.2
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 7.3e-180 634.8 665 52.0
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 9.6e-180 634.4 497 64.2
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.1e-178 630.9 662 53.0
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.4e-175 620.5 602 55.0
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 4.2e-175 619.0 667 51.9
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 1.6e-174 617.1 682 50.9
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.3e-173 614.0 420 72.1
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 2.5e-172 609.8 664 52.3
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 5.6e-172 608.6 471 65.2
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.6e-169 599.7 562 55.7
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.0e-161 573.5 460 63.7
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 1.0e-160 571.2 672 50.4
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.9e-159 567.0 654 49.8
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 1.1e-156 557.8 521 55.7
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 9.7e-148 528.1 712 45.8
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 6.9e-146 521.9 721 45.1
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 4.2e-143 512.7 592 49.8
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.3e-141 506.9 706 44.1
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 2.3e-141 506.9 665 44.2
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 7.4e-140 501.9 702 42.3
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 5.5e-135 485.7 487 52.2
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 2.1e-134 483.8 679 43.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 3.2e-119 433.3 803 38.2
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.2e-119 432.2 683 40.1
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.0e-109 399.8 655 40.3
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.0e-109 399.8 568 41.4
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 6.8e-109 399.1 568 41.4
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.5e-100 371.3 708 36.6
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 2.0e-97 360.9 375 53.3
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.3e-91 341.7 262 66.4
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 9.2e-90 335.5 495 39.6
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 3.3e-87 327.0 481 42.4
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 5.4e-82 309.7 260 62.7
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.7e-80 304.7 258 59.7
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 2.3e-72 277.7 519 34.9
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.1e-65 254.6 385 42.3
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 3.4e-60 237.3 393 38.2
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 2.3e-56 224.6 394 37.8
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 5.6e-55 219.9 196 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 2.7e-41 174.5 424 32.1
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.0e-40 172.6 206 48.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.1e-37 162.5 167 49.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 5.3e-37 160.2 189 45.0
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 3.8e-35 154.1 193 49.2
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 8.7e-32 142.9 132 62.1
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 1.9e-31 141.7 171 48.5
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.8e-29 135.2 491 28.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-29 135.2 114 56.1
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.8e-24 118.6 511 23.9
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.7e-22 112.1 94 57.4
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.8e-21 108.6 141 53.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.5e-15 89.0 154 37.0
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 4.4e-15 87.4 96 42.7
AL6G43550 Arabidopsis lyrata HOM05D001764 ORTHO05D079172 4.0e-08 64.3 137 29.2
SEGI_40191 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 4.8e-06 57.4 52 53.8


User provided reference genes

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