Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 0.0e+00 1196.0 692 100.0
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.0e-176 622.9 714 55.0
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.9e-150 535.8 713 47.7
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.4e-141 505.8 770 43.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.6e-140 504.2 709 45.4
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.3e-138 495.4 706 45.8
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 3.6e-137 493.0 717 46.6
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.8e-137 492.7 704 44.5
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.5e-135 487.6 714 45.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.0e-135 487.3 731 43.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.2e-133 479.6 717 45.2
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.1e-132 477.2 737 42.2
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.7e-132 476.9 710 45.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.0e-131 474.9 710 43.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.0e-131 473.4 713 43.6
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-130 471.5 717 45.7
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 9.6e-130 468.4 704 43.2
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.0e-128 463.0 709 44.3
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.6e-124 451.1 721 45.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.7e-124 450.3 709 48.0
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.3e-123 448.0 703 47.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.3e-123 447.2 736 41.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 3.9e-123 446.4 715 47.7
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.7e-123 445.3 708 46.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.7e-121 439.9 704 42.5
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.4e-120 437.2 711 41.9
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.0e-118 431.8 741 41.2
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.2e-118 430.6 709 45.3
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.9e-117 427.6 550 48.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 9.6e-114 415.2 730 41.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.1e-113 414.1 713 40.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.1e-112 411.8 704 40.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.4e-112 410.6 712 39.7
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.3e-112 409.5 720 39.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 9.0e-112 408.7 787 38.8
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.0e-111 407.5 710 42.7
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.5e-110 402.1 708 44.1
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 7.2e-109 399.1 705 41.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 2.3e-107 394.0 719 40.5
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 2.5e-106 390.6 728 39.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 8.2e-105 385.6 741 38.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-104 385.2 638 42.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.1e-104 383.6 726 39.9
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 4.1e-104 383.3 725 39.0
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 4.1e-104 383.3 762 38.8
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.0e-103 380.9 759 39.5
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.0e-102 378.6 718 40.4
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.7e-102 377.9 713 39.1
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 8.5e-102 375.6 709 38.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.0e-99 368.6 727 40.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.6e-98 364.0 765 36.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.1e-96 358.6 762 36.2
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.2e-95 355.1 754 36.5
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.5e-95 354.8 752 36.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.0e-94 352.1 686 37.6
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.0e-94 352.1 686 37.6
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.2e-94 350.9 635 39.5
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.2e-94 350.9 760 36.1
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 3.8e-94 350.1 703 36.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.4e-93 348.2 708 38.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.7e-92 343.2 700 36.7
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 6.1e-92 342.8 646 36.7
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.0e-91 342.0 710 37.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.8e-91 341.3 706 36.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.3e-91 340.9 701 36.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 5.2e-91 339.7 701 36.4
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 2.6e-90 337.4 799 35.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.3e-90 337.0 745 36.8
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.8e-89 334.0 696 36.8
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.7e-89 333.6 725 37.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.1e-88 328.9 716 37.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.6e-87 327.4 701 34.8
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 3.5e-87 327.0 694 36.0
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 4.5e-87 326.6 710 35.1
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 2.9e-86 323.9 721 35.4
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 8.5e-86 322.4 742 34.8
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.9e-85 321.2 547 39.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 5.5e-85 319.7 745 35.3
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 7.2e-85 319.3 637 37.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.7e-84 317.4 729 36.4
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.6e-84 317.0 863 33.0
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 6.1e-84 316.2 700 35.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 6.7e-83 312.8 694 33.3
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.3e-82 310.5 704 36.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.3e-81 308.5 807 33.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.4e-80 304.3 717 34.2
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.1e-80 303.9 694 34.1
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-78 297.7 693 37.1
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.2e-76 292.0 784 33.7
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.0e-75 288.9 584 38.9
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 8.8e-75 285.8 576 39.1
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 9.8e-74 282.3 697 33.0
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 2.2e-73 281.2 724 33.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 2.2e-73 281.2 784 31.4
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 6.3e-73 279.6 548 39.6
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.3e-73 279.3 697 34.6
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 5.4e-72 276.6 549 37.3
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 3.5e-71 273.9 542 39.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.9e-70 270.8 659 34.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 6.5e-70 269.6 572 35.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 8.6e-70 269.2 786 29.5
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.8e-67 261.5 912 28.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.3e-67 261.2 710 33.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.3e-67 261.2 684 31.1
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.0e-67 260.4 705 34.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.0e-67 260.4 907 29.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.2e-66 258.8 546 37.2
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.5e-66 258.5 761 31.7
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.4e-66 257.3 550 33.8
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.7e-65 255.0 870 29.3
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.7e-65 255.0 909 29.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.4e-64 251.1 772 30.3
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.4e-58 230.7 540 35.2
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 4.4e-58 230.3 752 30.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.9e-57 226.9 545 34.1
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.7e-55 221.1 548 31.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.1e-53 215.7 576 32.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.9e-53 214.9 580 32.2
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 4.0e-51 207.2 536 34.0
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.2e-49 201.4 448 37.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.6e-45 186.8 311 43.4
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.8e-44 184.5 891 25.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.4e-42 177.2 303 41.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 7.5e-42 176.4 678 28.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.4e-40 170.2 303 41.6
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.6e-39 168.7 728 27.9
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 7.8e-39 166.4 305 38.4
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.6e-38 163.3 339 38.9
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.1e-37 162.5 303 40.3
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.1e-36 156.4 156 46.8
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.4e-35 154.8 545 28.8
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 4.0e-35 154.1 439 32.8
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 6.8e-35 153.3 602 28.7
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.0e-34 151.8 346 35.5
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.3e-33 149.1 346 35.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.7e-33 148.7 174 49.4
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 8.4e-33 146.4 338 33.7
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 4.3e-29 134.0 173 42.2
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.8e-28 131.3 178 48.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 8.1e-28 129.8 341 33.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.4e-27 128.3 360 33.9
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 4.0e-27 127.5 256 34.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-26 125.2 367 33.5
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.1e-23 115.2 740 24.2
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 2.1e-23 115.2 383 30.0
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.0e-22 112.8 110 51.8
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 9.6e-21 106.3 157 43.9
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.6e-20 105.5 186 37.6
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.8e-20 104.8 446 26.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.4e-19 102.4 172 37.8
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.5e-18 97.4 320 34.1
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.6e-15 89.0 84 47.6
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-14 85.9 111 47.7
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-14 85.9 81 51.9
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.9e-14 84.3 532 24.1
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 6.7e-14 83.6 272 31.6
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.4e-13 80.1 65 60.0
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 2.4e-11 75.1 89 47.2
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 6.9e-11 73.6 112 42.0
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.0e-11 73.2 184 33.2
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.4e-10 71.2 140 34.3
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.5e-10 70.9 94 40.4
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.3e-09 69.3 96 38.5
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.7e-09 68.9 178 33.1
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 2.4e-08 65.1 61 50.8
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 5.5e-08 63.9 227 33.5
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.6e-07 62.4 79 43.0
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-06 58.9 187 34.2
BolC5t30033H Brassica oleracea HOM05D000639 ORTHO05D032511 1.8e-06 58.9 216 31.0


User provided reference genes

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