Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 0.0e+00 1462.6 755 100.0
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.1e-287 992.3 768 69.3
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 5.7e-285 984.2 764 69.1
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.7e-276 956.1 784 65.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.6e-274 948.7 773 65.3
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.1e-267 923.7 759 65.2
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.7e-265 919.5 780 64.1
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 4.2e-264 914.8 761 64.7
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 5.7e-261 904.4 762 62.2
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.8e-260 902.1 760 63.4
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.8e-260 902.1 768 62.4
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.4e-259 899.0 761 63.3
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 3.1e-259 898.7 769 62.0
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 2.9e-257 892.1 757 62.6
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 5.0e-257 891.3 712 63.8
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 5.5e-256 887.9 703 65.0
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 7.5e-253 877.5 643 69.4
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.6e-247 859.8 619 70.6
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 4.4e-245 851.7 759 59.9
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.4e-245 851.7 704 63.4
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 5.7e-245 851.3 761 59.7
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 3.7e-244 848.6 762 60.4
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.1e-243 847.0 763 59.9
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 5.4e-243 844.7 613 70.1
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 9.2e-243 844.0 613 70.8
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 9.5e-240 833.9 707 61.8
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.2e-239 833.6 758 58.0
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.3e-238 829.3 747 58.1
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 4.0e-238 828.6 686 62.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.6e-237 825.9 701 62.8
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 9.8e-237 823.9 764 56.8
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 9.8e-237 823.9 721 60.7
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 4.9e-236 821.6 678 63.6
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 6.4e-236 821.2 690 61.9
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 1.4e-235 820.1 708 61.3
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.4e-235 820.1 767 57.6
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 3.2e-235 818.9 702 61.8
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 5.4e-235 818.1 763 58.1
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 6.6e-233 811.2 759 57.7
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 6.6e-233 811.2 761 56.5
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 8.6e-233 810.8 737 56.4
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-232 810.4 712 59.1
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.5e-232 810.1 709 59.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.9e-232 809.7 762 57.9
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 3.3e-232 808.9 780 57.3
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 4.3e-232 808.5 746 58.4
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.2e-231 807.0 756 56.9
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 3.6e-231 805.4 754 57.2
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.1e-230 803.9 775 55.7
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 6.8e-230 801.2 775 55.1
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.2e-229 800.4 775 55.2
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 8.3e-228 794.3 683 60.6
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.1e-227 792.0 759 56.0
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.2e-226 790.4 545 69.4
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 3.3e-224 782.3 994 47.4
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 5.6e-224 781.6 697 60.5
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 2.1e-223 779.6 686 60.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.1e-223 777.7 592 65.2
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 3.1e-222 775.8 597 64.2
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 4.0e-222 775.4 680 60.0
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 5.8e-221 771.5 689 58.3
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 8.4e-220 767.7 703 57.2
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 3.0e-217 759.2 653 60.9
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 3.9e-217 758.8 653 61.3
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.1e-216 757.3 863 50.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 6.0e-210 734.9 638 60.3
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.7e-209 733.4 705 56.2
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 8.1e-207 724.5 637 57.0
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.4e-206 723.8 880 49.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.8e-206 723.4 732 53.6
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 6.9e-206 721.5 671 57.5
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.2e-204 716.5 846 49.1
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.4e-203 713.0 824 51.8
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 6.0e-202 708.4 677 56.0
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 6.2e-199 698.4 711 53.4
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 5.3e-198 695.3 681 55.2
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.6e-197 693.0 778 50.6
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 7.6e-197 691.4 556 62.9
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.3e-196 690.6 602 58.1
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.9e-193 679.1 604 57.0
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 2.1e-191 673.3 692 52.5
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 7.9e-186 654.8 676 55.6
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 6.7e-185 651.7 722 51.9
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.1e-182 642.9 629 53.6
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 7.6e-181 638.3 706 50.3
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.5e-179 633.3 598 58.0
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.2e-178 630.9 617 54.6
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 5.7e-176 622.1 627 52.2
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 8.2e-175 618.2 650 49.8
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 9.1e-166 588.2 797 45.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 5.0e-164 582.4 592 53.0
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.8e-161 573.9 720 42.5
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 6.7e-161 572.0 710 44.1
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.4e-158 563.5 653 44.3
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 2.3e-153 547.0 380 70.0
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 9.7e-152 541.6 384 68.5
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.7e-151 540.8 717 42.4
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.8e-151 540.0 547 57.2
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.5e-141 506.5 643 43.2
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.4e-136 490.0 406 61.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 8.6e-132 475.3 702 43.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.7e-124 451.1 692 41.8
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.8e-121 441.0 445 58.0
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.9e-118 431.0 292 68.2
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.4e-118 430.6 329 62.3
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 3.2e-118 430.3 364 60.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 3.5e-117 426.8 315 66.7
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.4e-112 409.8 502 50.0
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.1e-102 378.6 485 43.5
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.1e-102 378.6 500 40.8
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.4e-102 376.3 335 56.1
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 3.9e-100 370.2 439 44.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.7e-95 354.8 357 51.8
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 2.4e-94 350.9 525 36.8
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.6e-93 348.2 506 44.1
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 9.9e-80 302.4 323 52.0
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 7.1e-78 296.2 721 30.5
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.1e-73 282.3 300 54.3
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.8e-73 281.6 306 51.0
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 5.5e-70 270.0 561 32.4
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 8.7e-68 262.7 156 80.8
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.4e-67 259.6 215 59.5
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 6.7e-60 236.5 147 74.1
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.9e-59 235.0 155 73.5
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.1e-57 227.6 191 54.5
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 5.9e-56 223.4 147 72.8
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.7e-55 221.9 367 41.7
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-54 219.2 135 73.3
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.6e-53 215.3 287 43.2
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 6.1e-53 213.4 355 41.1
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 4.4e-51 207.2 204 54.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.4e-49 201.4 193 51.3
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 4.1e-49 200.7 287 44.3
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.0e-47 196.1 296 43.2
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.9e-46 191.8 295 43.1
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.1e-41 176.0 219 47.9
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 2.4e-41 174.9 293 38.6
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.5e-38 164.9 116 72.4
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.7e-34 152.1 266 41.0
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.4e-33 149.1 92 76.1
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.8e-33 148.7 84 83.3
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 4.2e-30 137.5 83 77.1
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 4.2e-30 137.5 290 33.8
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 4.1e-25 120.9 70 81.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 7.0e-25 120.2 105 60.0
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-24 119.4 84 61.9
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-23 114.8 70 80.0
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.2e-22 110.9 133 47.4
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.5e-22 109.8 85 65.9
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.6e-21 107.8 91 60.4
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.0e-15 87.4 93 52.7
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.8e-11 73.2 84 46.4
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.9e-10 71.6 97 42.3
Cpa.g.sc86.29 Carica papaya HOM05D000751 ORTHO05D005618 4.6e-08 64.3 122 39.3
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 5.0e-07 60.8 38 76.3
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 7.3e-06 57.0 104 32.7


User provided reference genes

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