Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 2.6e-144 515.4 259 100.0
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 9.6e-83 310.8 263 67.7
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 5.9e-48 195.3 255 49.8
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.7e-47 193.7 266 48.5
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 1.4e-44 184.1 281 45.9
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 1.4e-44 184.1 267 45.3
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 6.7e-44 181.8 267 46.8
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.1e-41 174.5 263 46.4
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 3.1e-41 172.9 264 45.1
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 4.1e-41 172.6 269 45.0
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 4.1e-41 172.6 264 44.7
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 9.1e-41 171.4 263 46.0
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 7.7e-40 168.3 268 44.0
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.3e-39 167.5 262 43.9
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 8.5e-39 164.9 236 45.8
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 1.6e-37 160.6 264 45.8
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 8.0e-37 158.3 253 43.5
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 3.9e-36 156.0 264 42.0
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 6.7e-36 155.2 257 43.2
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 4.4e-35 152.5 267 42.7
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 1.3e-34 151.0 267 42.7
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 2.2e-34 150.2 276 42.4
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 2.8e-34 149.8 253 41.5
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 1.1e-33 147.9 269 42.4
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.4e-33 147.5 253 41.1
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 2.4e-33 146.7 253 40.7
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 3.1e-33 146.4 261 41.4
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 4.1e-33 146.0 243 42.8
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 5.9e-32 142.1 265 40.8
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 6.5e-31 138.7 261 41.0
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 1.6e-29 134.0 279 38.7
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 2.1e-29 133.7 255 41.6
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 8.0e-29 131.7 270 39.3
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 8.0e-29 131.7 262 40.8
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 5.2e-28 129.0 279 37.3
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 6.8e-28 128.6 266 37.2
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 8.8e-28 128.3 276 36.6
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 4.4e-27 125.9 266 36.8
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 2.8e-26 123.2 285 37.2
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 2.7e-24 116.7 258 35.3
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 3.5e-24 116.3 261 36.0
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 4.5e-24 115.9 267 37.1
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 2.9e-23 113.2 259 37.8
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 6.5e-23 112.1 237 37.6
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 1.5e-22 110.9 257 36.2
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 1.9e-22 110.5 258 35.3
CSS0049923 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 1.6e-21 107.5 264 34.5
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 2.7e-21 106.7 258 34.9
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 3.6e-21 106.3 262 36.3
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 6.1e-21 105.5 163 45.4
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 1.4e-20 104.4 160 46.9
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 1.4e-20 104.4 160 46.9
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 1.8e-20 104.0 272 34.9
DCAR_020265 Daucus carota HOM05D006494 ORTHO05D007787 1.8e-20 104.0 161 46.0
FAN08G0782 Fragaria x ananassa HOM05D006494 ORTHO05D007787 2.3e-20 103.6 262 33.2
Actinidia08572 Actinidia chinensis HOM05D006494 ORTHO05D007787 5.2e-20 102.4 144 47.9
FAN13G0811 Fragaria x ananassa HOM05D006494 ORTHO05D007787 6.8e-20 102.1 258 33.7
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 2.6e-19 100.1 161 42.2
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 7.5e-19 98.6 169 45.0
CSS0030697 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 7.5e-19 98.6 164 43.3
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 9.8e-19 98.2 270 34.4
FvH4_5g32440 Fragaria vesca HOM05D006494 ORTHO05D007787 1.7e-18 97.4 260 32.7
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 2.8e-18 96.7 163 40.5
FAN18G4076 Fragaria x ananassa HOM05D006494 ORTHO05D007787 4.8e-18 95.9 260 32.3
FvH4_6g37300 Fragaria vesca HOM05D006494 ORTHO05D007787 1.1e-17 94.7 262 32.4
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 1.8e-17 94.0 227 36.6
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 2.4e-17 93.6 168 41.1
FAN05G4065 Fragaria x ananassa HOM05D006494 ORTHO05D007787 4.1e-17 92.8 264 33.0
FAN14G1471 Fragaria x ananassa HOM05D006494 ORTHO05D007787 4.1e-17 92.8 262 32.1
SHI13763 Sapria himalayana HOM05D000481 ORTHO05D003804 4.1e-17 92.8 162 42.0
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 2.7e-16 90.1 259 31.7
FAN02G3807 Fragaria x ananassa HOM05D006494 ORTHO05D007787 5.9e-16 89.0 262 32.4
Nn6g33336 Nelumbo nucifera HOM05D006494 ORTHO05D007787 7.7e-16 88.6 247 35.2
Oeu006795.1 Olea europaea HOM05D006494 ORTHO05D007787 7.7e-16 88.6 254 34.6
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 1.3e-15 87.8 170 40.0
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 8.6e-15 85.1 255 32.5
Oeu022606.1 Olea europaea HOM05D006494 ORTHO05D007787 1.1e-14 84.7 256 34.0
RcHm_v2.0_Chr3g0486201 Rosa chinensis HOM05D006494 ORTHO05D007787 1.1e-14 84.7 260 30.8
COL.COLO4_10083 Corchorus olitorius HOM05D006494 ORTHO05D007787 5.5e-14 82.4 158 38.0
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 5.5e-14 82.4 268 32.1
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 5.5e-14 82.4 274 28.5
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 1.6e-13 80.9 273 33.3
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 2.1e-13 80.5 265 29.8
Potri.004G101600 Populus trichocarpa HOM05D006494 ORTHO05D007787 2.8e-13 80.1 224 33.9
ECA232G4003 Erigeron canadensis HOM05D006494 ORTHO05D007787 3.6e-13 79.7 148 41.9
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 6.1e-13 79.0 263 30.8
Peaxi162Scf00444g00014 Petunia axillaris HOM05D006494 ORTHO05D007787 6.1e-13 79.0 252 30.2
PGSC0003DMG400029922 Solanum tuberosum HOM05D006494 ORTHO05D007787 8.0e-13 78.6 242 30.6
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 1.0e-12 78.2 270 31.1
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 2.3e-12 77.0 163 34.4
unitig_46.g18800 Utricularia gibba HOM05D006494 ORTHO05D007787 2.3e-12 77.0 139 39.6
Sabra04G0078700 Salix brachista HOM05D006494 ORTHO05D007787 3.0e-12 76.6 250 34.0
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 4.0e-12 76.3 264 32.2
Migut.F00309 Erythranthe guttata HOM05D006494 ORTHO05D007787 4.0e-12 76.3 244 31.1
FAN14G4923 Fragaria x ananassa HOM05D006494 ORTHO05D007787 4.0e-12 76.3 232 30.6
Lalb_Chr21g0305211 Lupinus albus HOM05D006494 ORTHO05D007787 4.0e-12 76.3 286 30.4
FvH4_6g24000 Fragaria vesca HOM05D006494 ORTHO05D007787 6.8e-12 75.5 232 30.6
FAN05G2781 Fragaria x ananassa HOM05D000001 ORTHO05D009295 6.8e-12 75.5 232 31.5
Nitab4.5_0000572g0070 Nicotiana tabacum HOM05D006494 ORTHO05D007787 2.0e-11 73.9 244 31.6
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 2.6e-11 73.6 264 31.8
PGSC0003DMG400017033 Solanum tuberosum HOM05D006494 ORTHO05D007787 5.7e-11 72.4 139 38.1
Psat0s2528g0040 Pisum sativum HOM05D006494 ORTHO05D007787 1.3e-10 71.2 270 28.9
Sed0010736 Sechium edule HOM05D006494 ORTHO05D007787 3.7e-10 69.7 269 30.1
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 8.3e-10 68.6 270 29.6
Peaxi162Scf00618g00753 Petunia axillaris HOM05D006494 ORTHO05D007787 1.4e-09 67.8 159 32.7
HanXRQChr09g0252471 Helianthus annuus HOM05D006494 ORTHO05D007787 2.4e-09 67.0 263 29.3
RcHm_v2.0_Chr3g0482721 Rosa chinensis HOM05D006494 ORTHO05D007787 9.2e-09 65.1 158 32.9
CiPaw.12G091000 Carya illinoinensis HOM05D006494 ORTHO05D007787 2.0e-08 63.9 153 31.4
PSO063G3044 Papaver somniferum HOM05D006494 ORTHO05D007787 2.0e-08 63.9 169 33.1
Glyma.02G280600 Glycine max HOM05D007739 ORTHO05D009838 1.1e-06 58.2 161 33.5
PSO478G4343 Papaver somniferum HOM05D006494 ORTHO05D007787 1.5e-06 57.8 162 31.5
LjContig00049g0023861 Lotus japonicus HOM05D007739 ORTHO05D009838 7.3e-06 55.5 159 33.3


User provided reference genes

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