Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030342m.g Citrus clementina HOM05D002320 ORTHO05D002428 1.3e-55 220.3 190 100.0
Ciclev10023356m.g Citrus clementina HOM05D002320 ORTHO05D002428 1.2e-13 80.9 36 100.0
Ciclev10019866m.g Citrus clementina HOM05D002320 ORTHO05D002428 1.4e-09 67.4 36 83.3
MD07G1094800 Malus domestica HOM05D002320 ORTHO05D002428 1.5e-08 63.9 36 77.8
THA.LOC104814106 Tarenaya hassleriana HOM05D002320 ORTHO05D002428 2.0e-08 63.5 36 77.8
PGR042G2252 Punica granatum HOM05D002320 ORTHO05D002428 4.4e-08 62.4 36 77.8
Cpa.g.sc52.80 Carica papaya HOM05D002320 ORTHO05D002428 9.7e-08 61.2 36 75.0
Duzib133G1189 Durio zibethinus HOM05D002320 ORTHO05D002428 9.7e-08 61.2 36 75.0
Gohir.A11G074400 Gossypium hirsutum HOM05D002320 ORTHO05D002428 9.7e-08 61.2 36 75.0
Gohir.A12G098500 Gossypium hirsutum HOM05D002320 ORTHO05D002428 9.7e-08 61.2 36 75.0
Gohir.D11G079100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 9.7e-08 61.2 36 75.0
Gorai.007G084700 Gossypium raimondii HOM05D002320 ORTHO05D002428 9.7e-08 61.2 36 75.0
Gorai.008G110800 Gossypium raimondii HOM05D002320 ORTHO05D002428 1.3e-07 60.8 36 72.2
CARHR111670 Cardamine hirsuta HOM05D002320 ORTHO05D002428 1.7e-07 60.5 36 72.2
Cfa011036 Carpinus fangiana HOM05D002320 ORTHO05D002428 1.7e-07 60.5 36 72.2
CDE11G0313 Ceratophyllum demersum HOM05D002320 ORTHO05D002428 1.7e-07 60.5 62 64.5
COL.COLO4_12365 Corchorus olitorius HOM05D002320 ORTHO05D002428 1.7e-07 60.5 36 75.0
Cc02_g25440 Coffea canephora HOM05D002320 ORTHO05D002428 2.2e-07 60.1 36 72.2
Manes.05G057300 Manihot esculenta HOM05D002320 ORTHO05D002428 2.2e-07 60.1 36 75.0
Peaxi162Scf00793g00346 Petunia axillaris HOM05D002320 ORTHO05D002428 2.2e-07 60.1 36 69.4
Thecc.01G401100 Theobroma cacao HOM05D002320 ORTHO05D002428 2.2e-07 60.1 36 72.2
Hma1.2p1_1397F.1_g280690 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 2.8e-07 59.7 36 72.2
MD02G1221500 Malus domestica HOM05D002320 ORTHO05D002428 2.8e-07 59.7 36 69.4
CARHR247980 Cardamine hirsuta HOM05D002320 ORTHO05D002428 3.7e-07 59.3 36 69.4
Haze_02889 Corylus avellana HOM05D002320 ORTHO05D002428 3.7e-07 59.3 36 72.2
Nitab4.5_0000563g0100 Nicotiana tabacum HOM05D002320 ORTHO05D002428 4.8e-07 58.9 36 69.4
Nitab4.5_0002341g0040 Nicotiana tabacum HOM05D002320 ORTHO05D002428 4.8e-07 58.9 36 69.4
Prupe.2G119300 Prunus persica HOM05D002320 ORTHO05D002428 4.8e-07 58.9 36 69.4
Dinv43597 Davidia involucrata HOM05D002320 ORTHO05D002428 6.3e-07 58.5 36 72.2
Gohir.D12G101700 Gossypium hirsutum HOM05D002320 ORTHO05D002428 6.3e-07 58.5 36 72.2
Sc26g0001690 Simmondsia chinensis HOM05D002320 ORTHO05D002428 6.3e-07 58.5 36 72.2
Gohir.A08G140100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 8.2e-07 58.2 36 72.2
Manes.01G273200 Manihot esculenta HOM05D002320 ORTHO05D002428 8.2e-07 58.2 36 72.2
EL10Ac1g00731 Beta vulgaris HOM05D002320 ORTHO05D002428 1.4e-06 57.4 36 69.4
CiPaw.13G023000 Carya illinoinensis HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 69.4
FvH4_7g09080 Fragaria vesca HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 72.2
FAN01G0449 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 72.2
FAN03G0444 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 72.2
FAN06G0692 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 72.2
FAN10G0730 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 72.2
FAN10G2100 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.8e-06 57.0 36 72.2
Actinidia21624 Actinidia chinensis HOM05D002320 ORTHO05D002428 2.4e-06 56.6 36 69.4
Sed0019875 Sechium edule HOM05D002320 ORTHO05D002428 2.4e-06 56.6 36 72.2
AUR62013774 Chenopodium quinoa HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 69.4
AUR62023382 Chenopodium quinoa HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 69.4
ClCG06G008100 Citrullus lanatus HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 72.2
MELO3C020368.2 Cucumis melo HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 72.2
CsaV3_2G011090 Cucumis sativus L. HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 72.2
Gohir.D08G161100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 69.4
Gorai.004G167400 Gossypium raimondii HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 69.4
Sed0021076 Sechium edule HOM05D002320 ORTHO05D002428 3.1e-06 56.2 36 72.2
Dinv28891 Davidia involucrata HOM05D002320 ORTHO05D002428 4.1e-06 55.8 36 69.4
Thhalv10028664m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 4.1e-06 55.8 36 66.7
Aa31LG5G10 Aethionema arabicum HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 66.7
Cc08_g01460 Coffea canephora HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
Duzib138G0483 Durio zibethinus HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
FvH4_5g20710 Fragaria vesca HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
FAN04G2023 Fragaria x ananassa HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
FAN18G0516 Fragaria x ananassa HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
Lj7C550G3 Lonicera japonica HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 72.2
QL04p026587 Quercus lobata HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
QL04p026989 Quercus lobata HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
RcHm_v2.0_Chr7g0206481 Rosa chinensis HOM05D002320 ORTHO05D002428 5.3e-06 55.5 36 69.4
CSS0028370 Camellia sinensis var. sinensis HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 69.4
Gohir.A08G162000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 66.7
Gohir.A09G197400 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 66.7
Gohir.D08G182000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 66.7
Gohir.D09G192000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 66.7
Gorai.004G190900 Gossypium raimondii HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 66.7
Gorai.006G214800 Gossypium raimondii HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 66.7
RcHm_v2.0_Chr1g0344931 Rosa chinensis HOM05D002320 ORTHO05D002428 7.0e-06 55.1 36 69.4
Dinv44036 Davidia involucrata HOM05D002320 ORTHO05D002428 9.1e-06 54.7 36 69.4
FAN08G1966 Fragaria x ananassa HOM05D002320 ORTHO05D002428 9.1e-06 54.7 36 69.4
FAN13G1732 Fragaria x ananassa HOM05D002320 ORTHO05D002428 9.1e-06 54.7 36 69.4


User provided reference genes

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