Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 0.0e+00 1151.7 661 100.0
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.7e-121 440.3 581 52.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 3.6e-118 429.9 563 51.0
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 9.2e-114 415.2 565 49.2
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-109 400.6 579 48.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.5e-108 397.9 569 48.7
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 9.2e-106 388.7 581 46.8
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.0e-105 386.0 568 46.3
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 3.0e-104 383.6 589 45.8
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.8e-102 377.1 664 43.7
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 4.0e-101 373.2 566 48.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.5e-100 371.3 674 43.2
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.5e-100 371.3 566 44.9
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 4.9e-99 366.3 567 47.4
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.6e-97 361.3 584 46.4
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.1e-97 360.9 569 45.0
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.0e-96 358.6 570 45.8
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.0e-96 358.6 570 45.8
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.9e-95 354.4 569 44.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 9.6e-95 352.1 670 43.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 6.9e-93 345.9 565 47.1
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.2e-92 345.1 566 43.1
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.9e-90 337.8 608 41.9
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.3e-88 331.6 573 42.4
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 6.7e-88 329.3 583 42.4
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.9e-87 327.8 533 46.5
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 4.8e-86 323.2 580 41.6
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 8.1e-86 322.4 580 41.0
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 4.0e-85 320.1 568 41.4
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.7e-83 314.7 589 40.7
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.9e-83 313.9 583 40.8
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.4e-82 311.6 642 39.3
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.6e-79 299.7 590 40.8
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 7.4e-79 299.3 611 38.8
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.3e-78 298.5 578 40.1
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.1e-77 295.4 568 38.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.0e-77 293.5 573 39.4
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 4.5e-76 290.0 321 53.9
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 7.6e-76 289.3 564 39.5
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.3e-75 288.5 613 36.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.7e-75 288.1 562 38.6
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.2e-75 287.7 318 55.0
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 4.2e-74 283.5 315 55.6
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 4.6e-73 280.0 580 39.8
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.3e-72 277.7 568 38.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 3.0e-72 277.3 349 50.4
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.4e-69 267.7 611 35.4
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.4e-69 267.7 606 39.4
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 5.3e-69 266.5 302 54.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 6.9e-69 266.2 620 35.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.0e-69 265.8 656 36.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.5e-68 265.0 600 36.0
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.0e-68 264.6 581 37.3
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.5e-67 259.6 584 38.2
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 4.2e-66 256.9 343 49.6
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.0e-64 252.3 576 38.0
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.3e-64 251.9 232 62.1
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.3e-64 251.1 571 38.4
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 6.7e-64 249.6 580 39.1
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 8.7e-64 249.2 580 38.1
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.1e-63 248.8 288 53.1
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.5e-63 248.4 572 37.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.5e-63 247.7 591 35.9
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 9.7e-63 245.7 602 34.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 4.8e-62 243.4 563 37.5
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 8.2e-62 242.7 577 38.6
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.2e-62 242.7 227 62.6
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.1e-61 242.3 307 51.1
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.4e-61 241.1 564 35.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.4e-61 241.1 324 47.8
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 3.1e-61 240.7 332 47.6
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.1e-61 240.7 582 35.9
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 5.3e-61 240.0 573 38.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 6.9e-61 239.6 582 36.3
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.2e-60 238.8 578 35.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.5e-60 238.4 252 55.6
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.5e-60 238.4 322 47.2
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.4e-60 237.3 281 51.6
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 4.5e-60 236.9 331 46.8
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.0e-59 235.7 573 38.2
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.3e-59 235.3 573 38.2
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 3.2e-58 230.7 193 64.8
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 5.5e-58 229.9 377 43.2
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 7.2e-58 229.6 577 39.0
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 9.4e-58 229.2 359 45.7
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.2e-57 228.8 572 36.0
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.6e-57 228.4 595 37.0
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.8e-56 224.9 576 34.9
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 8.8e-56 222.6 325 48.9
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.5e-55 221.9 582 34.7
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 4.4e-55 220.3 583 35.5
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 5.7e-55 219.9 224 57.6
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 7.4e-55 219.5 461 39.0
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.4e-53 215.3 571 34.9
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 9.1e-53 212.6 578 35.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.5e-52 211.8 215 57.2
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.3e-51 208.8 654 32.1
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 2.9e-51 207.6 621 31.9
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.8e-51 207.2 584 33.4
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 6.5e-51 206.5 577 34.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.5e-50 204.5 239 52.7
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.2e-49 202.2 340 43.8
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.1e-47 195.7 481 34.7
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 3.3e-47 194.1 330 43.0
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 2.2e-46 191.4 336 42.0
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.0e-44 184.9 178 60.1
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 4.5e-44 183.7 405 37.8
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.7e-44 183.0 498 34.5
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 5.0e-43 180.3 219 50.7
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 2.6e-39 167.9 579 30.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 1.1e-37 162.5 298 40.9
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 5.3e-37 160.2 360 37.2
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 4.0e-32 144.1 213 41.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 7.5e-31 139.8 82 79.3
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.2e-30 138.3 133 63.2
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 3.7e-30 137.5 252 40.9
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 6.3e-30 136.7 362 35.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 5.9e-28 130.2 347 32.3
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.0e-27 129.4 316 33.5
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.1e-21 107.5 117 59.8
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.5e-18 99.0 71 66.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 2.1e-17 95.1 135 45.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.1e-13 82.8 46 76.1
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.3e-11 75.9 86 45.3
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 5.6e-10 70.5 50 70.0
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 8.9e-08 63.2 93 41.9
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.2e-07 62.8 166 33.1
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 3.4e-07 61.2 46 52.2
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 7.5e-07 60.1 36 72.2
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 7.5e-07 60.1 150 26.7
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 3.7e-06 57.8 52 53.8


User provided reference genes

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