Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030242m.g Citrus clementina HOM05D012581 ORTHO05D000090 1.1e-87 328.6 304 100.0
Ciclev10030361m.g Citrus clementina HOM05D012581 ORTHO05D000090 2.0e-55 221.5 121 89.3
Ciclev10030265m.g Citrus clementina HOM05D012581 ORTHO05D000090 4.4e-31 140.6 73 89.0
Ciclev10028181m.g Citrus clementina HOM05D012581 ORTHO05D000090 7.3e-18 96.7 48 91.7
Ciclev10029967m.g Citrus clementina HOM05D012581 ORTHO05D000090 2.1e-17 95.1 48 91.7
Ciclev10030279m.g Citrus clementina HOM05D012581 ORTHO05D000090 2.1e-17 95.1 48 91.7
Ciclev10028124m.g Citrus clementina HOM05D012581 ORTHO05D000090 2.3e-16 91.7 48 89.6
Ciclev10028132m.g Citrus clementina HOM05D012581 ORTHO05D000090 5.2e-16 90.5 48 87.5
Atru.chr6.231 Acer truncatum HOM05D000162 ORTHO05D000090 4.9e-14 84.0 121 43.0
Ciclev10028053m.g Citrus clementina HOM05D000162 ORTHO05D000090 4.9e-14 84.0 104 50.0
Ciclev10030082m.g Citrus clementina HOM05D012581 ORTHO05D000090 4.9e-14 84.0 43 86.0
Ciclev10028481m.g Citrus clementina HOM05D012581 ORTHO05D000090 1.1e-13 82.8 48 77.1
Haze_24551 Corylus avellana HOM05D000162 ORTHO05D000090 4.1e-13 80.9 128 43.8
QL04p081370 Quercus lobata HOM05D000162 ORTHO05D000090 5.4e-13 80.5 115 47.0
Atru.chr5.1765 Acer truncatum HOM05D008619 ORTHO05D000090 1.2e-12 79.3 132 39.4
Atru.chr6.396 Acer truncatum HOM05D000162 ORTHO05D000090 1.6e-12 79.0 84 54.8
Atru.chr6.444 Acer truncatum HOM05D000162 ORTHO05D000090 1.6e-12 79.0 84 54.8
Ciclev10024138m.g Citrus clementina HOM05D000162 ORTHO05D000090 2.0e-12 78.6 79 49.4
RcHm_v2.0_Chr6g0289221 Rosa chinensis HOM05D000162 ORTHO05D000090 4.6e-12 77.4 115 42.6
Ciclev10003153m.g Citrus clementina HOM05D000162 ORTHO05D000090 1.3e-11 75.9 117 41.9
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.6e-11 73.6 131 41.2
QL12p042932 Quercus lobata HOM05D000162 ORTHO05D000090 6.6e-11 73.6 142 42.3
GSVIVG01000757001 Vitis vinifera HOM05D000162 ORTHO05D000090 1.1e-10 72.8 123 37.4
Thecc.01G265100 Theobroma cacao HOM05D008619 ORTHO05D000090 7.3e-10 70.1 120 40.8
Actinidia33760 Actinidia chinensis HOM05D000162 ORTHO05D000090 1.2e-09 69.3 99 44.4
MD05G1203800 Malus domestica HOM05D008619 ORTHO05D000090 2.1e-09 68.6 79 45.6
Prupe.8G230100 Prunus persica HOM05D008619 ORTHO05D000090 2.1e-09 68.6 132 36.4
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 3.6e-09 67.8 79 43.0
Atru.chr6.395 Acer truncatum HOM05D000162 ORTHO05D000090 6.2e-09 67.0 83 48.2
CSS0034526 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 8.0e-09 66.6 109 41.3
CSS0040127 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.4e-08 65.9 109 40.4
Ciclev10029914m.g Citrus clementina HOM05D012581 ORTHO05D021044 1.4e-08 65.9 29 96.6
Eucgr.K03302 Eucalyptus grandis HOM05D000162 ORTHO05D000090 1.4e-08 65.9 117 40.2
Nitab4.5_0003279g0010 Nicotiana tabacum HOM05D008619 ORTHO05D000090 1.4e-08 65.9 73 50.7
Nn1g02625 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.1e-08 64.7 125 39.2
AUR62032236 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.0e-08 64.3 111 36.9
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.5e-07 62.4 111 36.0
TAR629G0197 Trochodendron aralioides HOM05D000162 ORTHO05D000090 2.0e-07 62.0 122 37.7
Nitab4.5_0000187g0340 Nicotiana tabacum HOM05D008619 ORTHO05D000090 2.6e-07 61.6 63 55.6
CANSAT80G2501 Cannabis sativa HOM05D000162 ORTHO05D000090 3.4e-07 61.2 73 43.8
VMungo0464G0914 Vigna mungo HOM05D000162 ORTHO05D000090 3.4e-07 61.2 58 46.6
Cc01_g18680 Coffea canephora HOM05D000162 ORTHO05D000090 5.8e-07 60.5 79 43.0
CANSAT11G1734 Cannabis sativa HOM05D000162 ORTHO05D000090 7.5e-07 60.1 118 39.8
Eucgr.K03304 Eucalyptus grandis HOM05D000162 ORTHO05D000090 7.5e-07 60.1 86 43.0
QL03p014045 Quercus lobata HOM05D000162 ORTHO05D000090 7.5e-07 60.1 93 35.5
QL04p042212 Quercus lobata HOM05D000162 ORTHO05D000090 7.5e-07 60.1 91 35.2
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 7.5e-07 60.1 113 36.3
QL04p042189 Quercus lobata HOM05D000162 ORTHO05D000090 9.8e-07 59.7 95 33.7
QL09p001249 Quercus lobata HOM05D000162 ORTHO05D000090 9.8e-07 59.7 93 34.4
Sed0021875 Sechium edule HOM05D008619 ORTHO05D000090 9.8e-07 59.7 76 43.4
Duzib138G1327 Durio zibethinus HOM05D008619 ORTHO05D000090 1.3e-06 59.3 124 38.7
CANSAT80G1240 Cannabis sativa HOM05D000162 ORTHO05D000090 1.7e-06 58.9 54 53.7
QL03p014424 Quercus lobata HOM05D000162 ORTHO05D000090 1.7e-06 58.9 93 33.3
MBI11_g34856_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 2.2e-06 58.5 85 35.3
QL03p015188 Quercus lobata HOM05D000162 ORTHO05D000090 2.2e-06 58.5 91 33.0
Cpa.g.sc161.35 Carica papaya HOM05D000162 ORTHO05D000090 2.9e-06 58.2 120 35.8
Ciclev10024500m.g Citrus clementina HOM05D012581 ORTHO05D000090 2.9e-06 58.2 46 63.0
vmacro02633 Vaccinium macrocarpon HOM05D008619 ORTHO05D000090 2.9e-06 58.2 92 43.5
CsaV3_7G027920 Cucumis sativus L. HOM05D008619 ORTHO05D000090 3.7e-06 57.8 122 35.2
Oeu025825.1 Olea europaea HOM05D000162 ORTHO05D000090 3.7e-06 57.8 79 44.3
CsaV3_7G027720 Cucumis sativus L. HOM05D008619 ORTHO05D000090 8.3e-06 56.6 120 35.8
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 8.3e-06 56.6 108 29.6


User provided reference genes

Program Settings