Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030239m.g Citrus clementina HOM05D006874 ORTHO05D008334 2.0e-71 272.3 136 100.0
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 1.2e-15 87.0 106 40.6
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 1.2e-15 87.0 106 40.6
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 5.9e-15 84.7 135 37.8
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 1.0e-14 84.0 106 38.7
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 6.5e-14 81.3 112 36.6
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 1.9e-13 79.7 106 38.7
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.2e-12 77.0 135 36.3
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.6e-12 76.6 135 37.8
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 2.1e-12 76.3 139 34.5
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 1.4e-11 73.6 96 41.7
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 2.3e-11 72.8 138 34.1
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 3.0e-11 72.4 106 33.0
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 3.9e-11 72.0 106 36.8
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 6.7e-11 71.2 106 36.8
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 8.8e-11 70.9 104 35.6
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 3.3e-10 68.9 104 30.8
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 5.7e-10 68.2 106 34.9
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 5.7e-10 68.2 133 29.3
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 5.7e-10 68.2 135 34.8
COL.COLO4_32486 Corchorus olitorius HOM05D016697 ORTHO05D018163 9.7e-10 67.4 135 32.6
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 9.7e-10 67.4 115 35.7
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 3.7e-09 65.5 106 36.8
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 4.8e-09 65.1 138 33.3
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 8.2e-09 64.3 135 31.9
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.8e-08 63.2 115 34.8
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 1.8e-08 63.2 104 34.6
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 5.3e-08 61.6 110 30.9
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 9.1e-08 60.8 108 28.7
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 9.1e-08 60.8 106 34.0
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 1.2e-07 60.5 105 29.5
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 1.2e-07 60.5 105 33.3
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 1.5e-07 60.1 139 33.1
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 1.0e-06 57.4 107 30.8
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.0e-06 57.4 106 32.1
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.0e-06 57.4 106 32.1
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 1.3e-06 57.0 104 29.8
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 1.3e-06 57.0 105 28.6
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.7e-06 56.6 104 34.6
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 2.2e-06 56.2 109 33.0
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 2.2e-06 56.2 109 33.0
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 3.8e-06 55.5 108 30.6
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 8.5e-06 54.3 136 30.9


User provided reference genes

Program Settings