Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030146m.g Citrus clementina HOM05D007794 ORTHO05D009810 9.9e-219 763.1 362 100.0
Ciclev10030159m.g Citrus clementina HOM05D007794 ORTHO05D009810 1.2e-107 394.0 382 56.3
Ciclev10029800m.g Citrus clementina HOM05D007794 ORTHO05D009810 1.4e-87 327.4 263 64.6
Thecc.02G126700 Theobroma cacao HOM05D007794 ORTHO05D009810 1.5e-70 270.8 382 41.1
Sabra09G0060800 Salix brachista HOM05D007794 ORTHO05D009810 4.3e-65 252.7 371 45.3
Actinidia28021 Actinidia chinensis HOM05D007794 ORTHO05D009810 4.1e-63 246.1 378 38.9
vmacro00480 Vaccinium macrocarpon HOM05D007794 ORTHO05D009810 1.2e-59 234.6 357 40.6
Nitab4.5_0005908g0010 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.6e-59 234.2 379 37.5
Rhsim05G0099000 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.3e-58 231.1 372 37.9
Solyc01g106510.2 Solanum lycopersicum HOM05D007794 ORTHO05D009810 5.1e-58 229.2 361 39.3
Sopen01g048870 Solanum pennellii HOM05D007794 ORTHO05D009810 1.5e-57 227.6 361 39.3
Peaxi162Scf00016g03335 Petunia axillaris HOM05D007794 ORTHO05D009810 4.3e-57 226.1 374 39.0
Manes.10G095300 Manihot esculenta HOM05D007794 ORTHO05D009810 2.2e-56 223.8 371 37.5
PGSC0003DMG400035168 Solanum tuberosum HOM05D007794 ORTHO05D009810 4.8e-56 222.6 347 37.2
Rhsim05G0099400 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.4e-55 221.1 359 39.0
Prupe.8G073600 Prunus persica HOM05D007794 ORTHO05D009810 2.4e-55 220.3 382 36.1
Glyma.08G066300 Glycine max HOM05D007794 ORTHO05D009810 5.3e-55 219.2 383 35.8
vmacro19603 Vaccinium macrocarpon HOM05D007794 ORTHO05D009810 1.3e-53 214.5 335 40.9
Hma1.2p1_0908F.1_g235590 Hydrangea macrophylla HOM05D007794 ORTHO05D009810 1.7e-53 214.2 358 36.0
Rhsim05G0099600 Rhododendron simsii HOM05D007794 ORTHO05D009810 2.2e-53 213.8 351 39.0
Manes.10G095400 Manihot esculenta HOM05D007794 ORTHO05D009810 9.4e-52 208.4 385 36.4
Nitab4.5_0001477g0100 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.2e-51 208.0 378 36.5
Nitab4.5_0005609g0010 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.2e-51 208.0 358 37.7
Oeu059895.1 Olea europaea HOM05D007794 ORTHO05D009810 2.1e-51 207.2 363 35.3
Nitab4.5_0000935g0170 Nicotiana tabacum HOM05D007794 ORTHO05D009810 2.7e-51 206.8 373 36.2
Hma1.2p1_0908F.1_g235600 Hydrangea macrophylla HOM05D007794 ORTHO05D009810 7.9e-51 205.3 358 36.9
Nitab4.5_0002750g0020 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.0e-50 204.9 373 35.7
Peaxi162Scf00152g00085 Petunia axillaris HOM05D007794 ORTHO05D009810 3.9e-50 203.0 373 37.3
QL09p046398 Quercus lobata HOM05D007794 ORTHO05D009810 6.7e-50 202.2 375 36.0
Potri.009G078900 Populus trichocarpa HOM05D007794 ORTHO05D009810 5.3e-47 192.6 225 50.7
VMungo0251G0278 Vigna mungo HOM05D007794 ORTHO05D009810 2.5e-44 183.7 362 33.4
Solyc01g106530.1 Solanum lycopersicum HOM05D007794 ORTHO05D009810 5.2e-42 176.0 354 33.3
Manes.10G095500 Manihot esculenta HOM05D007794 ORTHO05D009810 2.0e-41 174.1 384 33.6
COL.COLO4_32419 Corchorus olitorius HOM05D007794 ORTHO05D009810 3.7e-40 169.9 322 36.3
PGSC0003DMG400010680 Solanum tuberosum HOM05D007794 ORTHO05D009810 4.8e-40 169.5 383 31.1
PGSC0003DMG400005122 Solanum tuberosum HOM05D007794 ORTHO05D009810 1.4e-39 167.9 374 32.6
Migut.K01245 Erythranthe guttata HOM05D007794 ORTHO05D009810 4.1e-39 166.4 367 33.2
Nn3g21331 Nelumbo nucifera HOM05D007794 ORTHO05D009810 5.3e-39 166.0 383 32.9
Migut.N01109 Erythranthe guttata HOM05D007794 ORTHO05D009810 7.0e-39 165.6 375 32.8
Migut.N01108 Erythranthe guttata HOM05D007794 ORTHO05D009810 7.7e-38 162.2 385 30.6
Sopen01g048890 Solanum pennellii HOM05D007794 ORTHO05D009810 2.2e-37 160.6 330 33.0
Solyc01g106520.1 Solanum lycopersicum HOM05D007794 ORTHO05D009810 2.9e-37 160.2 377 33.4
CAN.G504.32 Capsicum annuum HOM05D007794 ORTHO05D009810 8.5e-37 158.7 377 31.6
CAN.G1074.4 Capsicum annuum HOM05D007794 ORTHO05D009810 1.5e-36 157.9 360 32.2
Rhsim05G0098900 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.9e-36 157.5 192 45.3
Nitab4.5_0002750g0070 Nicotiana tabacum HOM05D007794 ORTHO05D009810 2.1e-35 154.1 362 32.3
Solyc01g106130.1 Solanum lycopersicum HOM05D007794 ORTHO05D009810 2.7e-35 153.7 384 29.7
Solyc01g106140.2 Solanum lycopersicum HOM05D007794 ORTHO05D009810 3.6e-35 153.3 386 30.8
Ciclev10030054m.g Citrus clementina HOM05D007794 ORTHO05D009810 1.8e-34 151.0 154 51.9
PGSC0003DMG400010679 Solanum tuberosum HOM05D007794 ORTHO05D009810 1.8e-34 151.0 386 30.6
Oeu059893.1 Olea europaea HOM05D007794 ORTHO05D009810 1.2e-33 148.3 316 33.9
Sopen01g048520 Solanum pennellii HOM05D007794 ORTHO05D009810 1.7e-32 144.4 386 30.1
Sopen01g048880 Solanum pennellii HOM05D007794 ORTHO05D009810 5.3e-31 139.4 378 31.5
CAN.G504.34 Capsicum annuum HOM05D007794 ORTHO05D009810 3.5e-30 136.7 340 30.3
TPR.G17365 Trifolium pratense HOM05D007794 ORTHO05D009810 3.8e-29 133.3 367 30.2
SGA_v2.0_scaffold207G41950 Striga asiatica HOM05D007794 ORTHO05D009810 5.0e-29 132.9 363 29.8
Sopen01g048510 Solanum pennellii HOM05D007794 ORTHO05D009810 3.2e-28 130.2 185 40.0
CAN.G504.74 Capsicum annuum HOM05D007794 ORTHO05D009810 1.5e-25 121.3 158 39.2
SGA_v2.0_scaffold98G29291 Striga asiatica HOM05D007794 ORTHO05D009810 1.3e-24 118.2 211 35.1
Nn3g21338 Nelumbo nucifera HOM05D007794 ORTHO05D009810 1.6e-22 111.3 228 32.9
SGA_v2.0_scaffold207G41942 Striga asiatica HOM05D007794 ORTHO05D009810 2.0e-22 110.9 217 33.2
SGA_v2.0_scaffold207G41947 Striga asiatica HOM05D007794 ORTHO05D009810 4.5e-22 109.8 350 29.1
SGA_v2.0_scaffold207G41944 Striga asiatica HOM05D007794 ORTHO05D009810 3.8e-21 106.7 233 32.2
Nn3g19115 Nelumbo nucifera HOM05D007794 ORTHO05D009810 4.2e-20 103.2 328 30.8
Cfa004824 Carpinus fangiana HOM05D007794 ORTHO05D009810 1.0e-18 98.6 163 38.7
Migut.C00209 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.2e-17 95.1 234 30.3
SGA_v2.0_scaffold98G29290 Striga asiatica HOM05D007794 ORTHO05D009810 3.7e-16 90.1 160 35.6
Migut.C00196 Erythranthe guttata HOM05D007794 ORTHO05D009810 4.9e-16 89.7 150 33.3
Migut.C00194 Erythranthe guttata HOM05D007794 ORTHO05D009810 7.0e-15 85.9 200 27.5
Peaxi162Scf00152g00088 Petunia axillaris HOM05D007794 ORTHO05D009810 1.0e-13 82.0 87 46.0
Rhsim02G0140200 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.7e-13 81.3 106 46.2
Migut.N01107 Erythranthe guttata HOM05D007794 ORTHO05D009810 2.9e-13 80.5 168 35.1
Migut.C00190 Erythranthe guttata HOM05D007794 ORTHO05D009810 8.6e-13 79.0 195 28.7
Migut.C00191 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.1e-12 78.6 195 28.2
COL.COLO4_32420 Corchorus olitorius HOM05D007794 ORTHO05D009810 9.5e-12 75.5 141 36.2
Migut.C00193 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.2e-11 75.1 229 29.7
Actinidia01831 Actinidia chinensis HOM05D000151 ORTHO05D000074 2.3e-10 70.9 155 31.0
Migut.C00208 Erythranthe guttata HOM05D007794 ORTHO05D009810 4.0e-10 70.1 129 28.7
MBI19_g47417_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 4.4e-09 66.6 72 43.1
Dinv38940 Davidia involucrata HOM05D000151 ORTHO05D000074 9.8e-09 65.5 344 20.6
MBI19_g14409_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 9.8e-09 65.5 72 43.1
Aqoxy7G00582 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.3e-08 65.1 362 23.2
MBI19_g31306_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 1.3e-08 65.1 72 41.7
Aqoxy6G00559 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.9e-08 63.9 143 30.1
FAN06G2364 Fragaria x ananassa HOM05D000151 ORTHO05D001690 3.7e-08 63.5 56 57.1
MBI19_g10186_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 3.7e-08 63.5 80 41.2
Migut.B00040 Erythranthe guttata HOM05D000151 ORTHO05D000074 4.9e-08 63.2 144 32.6
Migut.C00192 Erythranthe guttata HOM05D007794 ORTHO05D009810 4.9e-08 63.2 157 30.6
Lj2P493T39 Lonicera japonica HOM05D000151 ORTHO05D000074 6.4e-08 62.8 168 31.0
FAN06G3187 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.1e-07 62.0 56 55.4
Lj2C484T9 Lonicera japonica HOM05D000151 ORTHO05D000074 3.2e-07 60.5 134 31.3
Aqoxy4G00447 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.1e-07 60.1 83 37.3
Migut.O00773 Erythranthe guttata HOM05D007794 ORTHO05D009810 5.4e-07 59.7 84 32.1
Lsat_1_v5_gn_9_46700 Lactuca sativa HOM05D000151 ORTHO05D000074 5.4e-07 59.7 173 27.7
Thecc.03G003700 Theobroma cacao HOM05D000151 ORTHO05D000074 7.0e-07 59.3 205 25.9
BraA08t34127Z Brassica rapa HOM05D000151 ORTHO05D000074 9.2e-07 58.9 152 23.7
Rhsim05G0099500 Rhododendron simsii HOM05D007794 ORTHO05D009810 9.2e-07 58.9 123 36.6
PSO210G4420 Papaver somniferum HOM05D003035 ORTHO05D000440 1.2e-06 58.5 76 32.9
MBI19_g34542_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 2.0e-06 57.8 76 35.5
PGSC0003DMG400005121 Solanum tuberosum HOM05D007794 ORTHO05D009810 2.0e-06 57.8 63 39.7
Lj2P546T28 Lonicera japonica HOM05D000151 ORTHO05D000074 2.7e-06 57.4 199 28.1
Lj2P459T34 Lonicera japonica HOM05D000151 ORTHO05D000074 3.5e-06 57.0 149 30.2
Rhsim08G0204500 Rhododendron simsii HOM05D007354 ORTHO05D006294 3.5e-06 57.0 149 25.5
Dinv37496 Davidia involucrata HOM05D000151 ORTHO05D000074 4.6e-06 56.6 235 26.0
Peaxi162Scf00299g00320 Petunia axillaris HOM05D007794 ORTHO05D009810 6.0e-06 56.2 71 45.1
Thecc.03G003800 Theobroma cacao HOM05D000151 ORTHO05D000074 6.0e-06 56.2 205 25.4
A08p21740 Brassica napus HOM05D000151 ORTHO05D000074 7.8e-06 55.8 152 23.0
Lj2P549T12 Lonicera japonica HOM05D000151 ORTHO05D000074 7.8e-06 55.8 131 32.1
TAR626G1895 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.8e-06 55.8 78 39.7


User provided reference genes

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