Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 9.3e-182 640.6 454 100.0
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.4e-121 440.7 483 74.5
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 6.6e-103 378.6 488 69.9
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 5.5e-49 199.5 312 43.9
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.8e-47 194.5 278 47.5
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 2.5e-46 190.7 501 43.3
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 2.2e-42 177.6 295 42.0
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 8.4e-42 175.6 502 45.6
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 1.9e-41 174.5 287 41.5
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 2.1e-40 171.0 323 41.2
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 4.3e-38 163.3 465 47.1
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 5.7e-38 162.9 310 38.7
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.6e-37 161.4 302 38.4
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 8.2e-37 159.1 278 39.9
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 1.2e-35 155.2 489 44.0
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 1.5e-35 154.8 310 39.0
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 2.0e-35 154.5 279 40.5
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 2.6e-35 154.1 486 47.3
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 2.6e-35 154.1 301 39.5
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.4e-35 153.7 324 35.5
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 7.7e-35 152.5 324 36.1
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 5.5e-33 146.4 309 36.9
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.2e-32 145.2 347 32.3
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 2.7e-32 144.1 291 36.1
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 3.0e-31 140.6 290 37.6
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 3.9e-31 140.2 484 43.0
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 1.1e-30 138.7 349 34.7
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 2.0e-30 137.9 492 39.0
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 2.5e-30 137.5 311 39.9
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 3.3e-30 137.1 361 33.0
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 5.7e-30 136.3 295 39.0
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.4e-30 136.0 489 45.2
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 1.3e-29 135.2 491 44.0
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 3.7e-29 133.7 311 48.9
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 4.8e-29 133.3 489 45.2
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.4e-28 131.7 510 35.1
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 1.8e-28 131.3 282 38.7
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.4e-28 131.0 493 44.8
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 2.4e-28 131.0 310 38.4
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 3.1e-28 130.6 305 38.7
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 4.1e-28 130.2 280 37.9
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.2e-27 128.6 279 36.6
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.0e-27 127.9 487 45.2
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 7.7e-27 125.9 299 38.8
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 7.7e-27 125.9 285 35.8
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 1.0e-26 125.6 288 36.5
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.2e-26 124.4 325 33.2
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 3.8e-26 123.6 292 32.9
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 3.8e-26 123.6 282 35.8
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 5.0e-26 123.2 519 41.0
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 1.1e-25 122.1 282 36.2
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 2.5e-25 120.9 241 35.7
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 7.2e-25 119.4 349 33.0
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 9.4e-25 119.0 490 30.0
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 9.4e-25 119.0 313 54.6
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 3.6e-24 117.1 497 43.3
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 1.4e-23 115.2 325 32.6
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 1.4e-23 115.2 305 31.5
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.4e-23 115.2 472 35.6
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 2.3e-23 114.4 522 42.1
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 6.7e-23 112.8 516 42.8
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 8.8e-23 112.5 300 35.0
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.5e-22 111.7 485 43.5
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.5e-22 111.7 523 41.5
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.5e-22 111.7 276 35.9
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.0e-22 111.3 301 32.6
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 2.0e-22 111.3 284 33.1
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 7.4e-22 109.4 490 43.1
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 7.4e-22 109.4 488 42.8
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 1.3e-21 108.6 286 36.7
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 3.7e-21 107.1 277 33.2
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.1e-20 105.5 294 33.3
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 1.1e-20 105.5 486 36.0
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.8e-20 104.8 511 42.5
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 1.5e-19 101.7 277 32.9
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 1.5e-19 101.7 487 37.4
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 2.0e-19 101.3 296 33.4
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 3.5e-19 100.5 277 33.9
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 6.5e-18 96.3 278 32.0
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 8.5e-18 95.9 96 58.3
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 2.7e-16 90.9 115 51.3
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 8.0e-16 89.4 279 34.1
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 1.1e-14 85.5 253 33.2
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 3.3e-14 84.0 306 30.1
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 5.7e-14 83.2 273 28.9
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 9.7e-14 82.4 290 30.0
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.3e-13 82.0 70 55.7
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 1.7e-13 81.6 291 29.9
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 1.8e-12 78.2 91 50.5
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 3.1e-12 77.4 75 50.7
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 3.1e-12 77.4 75 50.7
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 3.1e-12 77.4 75 50.7
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 5.3e-12 76.6 75 50.7
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 5.9e-11 73.2 163 36.8
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 7.7e-11 72.8 292 30.1
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 1.3e-10 72.0 281 30.2
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.2e-10 71.2 60 63.3
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 3.8e-10 70.5 279 30.1
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 4.2e-09 67.0 220 34.5
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 5.5e-09 66.6 289 27.7
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 4.7e-08 63.5 291 28.9
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.4e-07 62.0 62 48.4
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 1.4e-07 62.0 62 48.4
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 1.4e-07 62.0 44 65.9
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 2.3e-07 61.2 281 29.5
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 4.0e-07 60.5 61 47.5
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 6.8e-07 59.7 114 34.2
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.4e-06 57.4 348 47.1


User provided reference genes

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