Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029764m.g Citrus clementina HOM05D000579 ORTHO05D002295 3.1e-23 110.9 56 100.0
Ciclev10028935m.g Citrus clementina HOM05D000579 ORTHO05D002295 3.0e-13 77.8 47 80.9
Atru.chr5.3031 Acer truncatum HOM05D000579 ORTHO05D002295 3.6e-11 70.9 48 72.9
MD10G1074900 Malus domestica HOM05D000579 ORTHO05D002295 6.8e-10 66.6 52 61.5
PGR102G2205 Punica granatum HOM05D000579 ORTHO05D002295 1.2e-09 65.9 46 67.4
Cfa004990 Carpinus fangiana HOM05D000579 ORTHO05D002295 1.5e-09 65.5 48 64.6
Carub.0007s0372 Capsella rubella HOM05D000579 ORTHO05D002295 2.0e-09 65.1 46 63.0
AT4G36610 Arabidopsis thaliana HOM05D000579 ORTHO05D002295 2.6e-09 64.7 46 63.0
Haze_02396 Corylus avellana HOM05D000579 ORTHO05D002295 3.4e-09 64.3 48 62.5
AL7G14460 Arabidopsis lyrata HOM05D000579 ORTHO05D002295 4.4e-09 63.9 46 63.0
CARHR108950 Cardamine hirsuta HOM05D000579 ORTHO05D002295 4.4e-09 63.9 46 63.0
Eucgr.G01673 Eucalyptus grandis HOM05D000579 ORTHO05D002295 5.8e-09 63.5 46 63.0
Eucgr.H01277 Eucalyptus grandis HOM05D000579 ORTHO05D002295 5.8e-09 63.5 49 63.3
Manes.02G094200 Manihot esculenta HOM05D000579 ORTHO05D002295 5.8e-09 63.5 46 65.2
Eucgr.G01665 Eucalyptus grandis HOM05D000579 ORTHO05D002295 7.5e-09 63.2 46 63.0
Aa31LG6G13410 Aethionema arabicum HOM05D000579 ORTHO05D002295 9.8e-09 62.8 46 58.7
AL3G51630 Arabidopsis lyrata HOM05D000579 ORTHO05D002295 9.8e-09 62.8 46 60.9
AT2G18360 Arabidopsis thaliana HOM05D000579 ORTHO05D002295 9.8e-09 62.8 46 60.9
Thecc.02G084200 Theobroma cacao HOM05D000579 ORTHO05D002295 9.8e-09 62.8 47 61.7
MD05G1065200 Malus domestica HOM05D000579 ORTHO05D002295 1.3e-08 62.4 52 59.6
BcaNung04423 Brassica carinata HOM05D000579 ORTHO05D002295 1.7e-08 62.0 45 62.2
SGA_v2.0_scaffold54G19536 Striga asiatica HOM05D000579 ORTHO05D002295 1.7e-08 62.0 49 61.2
Carub.0003s3251 Capsella rubella HOM05D000579 ORTHO05D002295 2.2e-08 61.6 43 65.1
TWI09G1058 Tripterygium wilfordii HOM05D000579 ORTHO05D002295 2.2e-08 61.6 46 65.2
Dinv42058 Davidia involucrata HOM05D000579 ORTHO05D002295 2.9e-08 61.2 45 62.2
Eucgr.G01663 Eucalyptus grandis HOM05D000579 ORTHO05D002295 2.9e-08 61.2 46 60.9
MD02G1146700 Malus domestica HOM05D000579 ORTHO05D002295 2.9e-08 61.2 45 64.4
MD15G1260700 Malus domestica HOM05D000579 ORTHO05D002295 2.9e-08 61.2 45 66.7
Prupe.7G155500 Prunus persica HOM05D000579 ORTHO05D002295 2.9e-08 61.2 45 66.7
Prupe.8G095900 Prunus persica HOM05D000579 ORTHO05D002295 2.9e-08 61.2 50 58.0
Prupe.8G096000 Prunus persica HOM05D000579 ORTHO05D002295 2.9e-08 61.2 50 60.0
RcHm_v2.0_Chr2g0101411 Rosa chinensis HOM05D000579 ORTHO05D002295 2.9e-08 61.2 47 66.0
A06p33260 Brassica napus HOM05D000579 ORTHO05D002295 3.7e-08 60.8 46 56.5
BraA06t26256Z Brassica rapa HOM05D000579 ORTHO05D002295 3.7e-08 60.8 46 56.5
TPR.G22292 Trifolium pratense HOM05D000579 ORTHO05D002295 3.7e-08 60.8 47 55.3
Aa31LG8G15670 Aethionema arabicum HOM05D000579 ORTHO05D002295 4.9e-08 60.5 46 58.7
A01p02290 Brassica napus HOM05D000579 ORTHO05D002295 4.9e-08 60.5 45 60.0
RcHm_v2.0_Chr6g0264591 Rosa chinensis HOM05D000579 ORTHO05D002295 4.9e-08 60.5 48 58.3
BcaNung00718 Brassica carinata HOM05D000579 ORTHO05D002295 6.4e-08 60.1 45 60.0
C01p02500 Brassica napus HOM05D000579 ORTHO05D002295 6.4e-08 60.1 45 60.0
BolC1t00238H Brassica oleracea HOM05D000579 ORTHO05D002295 6.4e-08 60.1 45 60.0
Eucgr.G01668 Eucalyptus grandis HOM05D000579 ORTHO05D002295 6.4e-08 60.1 45 60.0
RcHm_v2.0_Chr6g0264071 Rosa chinensis HOM05D000579 ORTHO05D002295 6.4e-08 60.1 50 56.0
Actinidia35634 Actinidia chinensis HOM05D000579 ORTHO05D002295 8.3e-08 59.7 48 60.4
BraA01t00217Z Brassica rapa HOM05D000579 ORTHO05D002295 8.3e-08 59.7 45 60.0
Eucgr.G01677 Eucalyptus grandis HOM05D000579 ORTHO05D002295 8.3e-08 59.7 48 58.3
Eucgr.L00997 Eucalyptus grandis HOM05D000579 ORTHO05D002295 1.1e-07 59.3 45 60.0
Sp7g34260 Schrenkiella parvula HOM05D000579 ORTHO05D002295 1.1e-07 59.3 45 62.2
C03p59200 Brassica napus HOM05D000579 ORTHO05D002295 1.4e-07 58.9 46 54.3
BolC3t18176H Brassica oleracea HOM05D000579 ORTHO05D002295 1.4e-07 58.9 46 54.3
CiPaw.01G039800 Carya illinoinensis HOM05D000579 ORTHO05D002295 1.4e-07 58.9 48 60.4
FvH4_1g13200 Fragaria vesca HOM05D000579 ORTHO05D002295 1.4e-07 58.9 45 64.4
FAN19G3105 Fragaria x ananassa HOM05D003046 ORTHO05D002295 1.4e-07 58.9 45 64.4
FAN23G0384 Fragaria x ananassa HOM05D000579 ORTHO05D002295 1.4e-07 58.9 45 64.4
FAN26G1465 Fragaria x ananassa HOM05D000579 ORTHO05D002295 1.4e-07 58.9 45 64.4
FAN28G0663 Fragaria x ananassa HOM05D003046 ORTHO05D002295 1.4e-07 58.9 45 64.4
FAN28G0674 Fragaria x ananassa HOM05D003046 ORTHO05D002295 1.4e-07 58.9 45 64.4
Aqoxy5G01613 Aquilegia oxysepala HOM05D000579 ORTHO05D002295 1.9e-07 58.5 43 62.8
Hund13981 Selenicereus undatus HOM05D000579 ORTHO05D002295 1.9e-07 58.5 47 59.6
THA.LOC104819783 Tarenaya hassleriana HOM05D000579 ORTHO05D002295 1.9e-07 58.5 46 56.5
Thhalv10023049m.g Eutrema salsugineum HOM05D000579 ORTHO05D002295 2.4e-07 58.2 46 56.5
DCAR_025945 Daucus carota HOM05D000579 ORTHO05D002295 3.2e-07 57.8 48 60.4
Thhalv10025766m.g Eutrema salsugineum HOM05D000579 ORTHO05D002295 3.2e-07 57.8 45 60.0
Potri.005G122600 Populus trichocarpa HOM05D000579 ORTHO05D002295 3.2e-07 57.8 48 60.4
Thecc.01G034400 Theobroma cacao HOM05D000579 ORTHO05D002295 3.2e-07 57.8 51 56.9
TWI53G1143 Tripterygium wilfordii HOM05D000579 ORTHO05D002295 3.2e-07 57.8 46 58.7
Actinidia00531 Actinidia chinensis HOM05D000579 ORTHO05D002295 4.1e-07 57.4 46 56.5
Duzib264G0287 Durio zibethinus HOM05D000579 ORTHO05D002295 4.1e-07 57.4 51 56.9
Oeu063200.1 Olea europaea HOM05D000579 ORTHO05D002295 4.1e-07 57.4 45 55.6
unitig_62.g23444 Utricularia gibba HOM05D000579 ORTHO05D002295 4.1e-07 57.4 48 58.3
vmacro17826 Vaccinium macrocarpon HOM05D000579 ORTHO05D002295 4.1e-07 57.4 45 60.0
Gohir.D11G190400 Gossypium hirsutum HOM05D000579 ORTHO05D002295 5.4e-07 57.0 51 56.9
Gorai.007G202800 Gossypium raimondii HOM05D000579 ORTHO05D002295 5.4e-07 57.0 51 56.9
MBI10_g18252_MAGBIO Magnolia biondii HOM05D000579 ORTHO05D002295 5.4e-07 57.0 48 56.2
QL08p012447 Quercus lobata HOM05D000579 ORTHO05D002295 5.4e-07 57.0 48 56.2
Sp3g31770 Schrenkiella parvula HOM05D000579 ORTHO05D002295 5.4e-07 57.0 46 56.5
SpUn0030_0060 Schrenkiella parvula HOM05D000579 ORTHO05D002295 5.4e-07 57.0 46 56.5
vmacro02097 Vaccinium macrocarpon HOM05D000579 ORTHO05D002295 5.4e-07 57.0 46 56.5
GSVIVG01031980001 Vitis vinifera HOM05D000579 ORTHO05D002295 5.4e-07 57.0 46 60.9
MSTRG.23522 Avicennia marina HOM05D000579 ORTHO05D002295 7.0e-07 56.6 46 60.9
CiPaw.01G040000 Carya illinoinensis HOM05D000579 ORTHO05D002295 7.0e-07 56.6 45 60.0
FvH4_1g13190 Fragaria vesca HOM05D000579 ORTHO05D002295 7.0e-07 56.6 45 62.2
FvH4_4g26240 Fragaria vesca HOM05D000579 ORTHO05D002295 9.2e-07 56.2 48 54.2
FAN12G0800 Fragaria x ananassa HOM05D000579 ORTHO05D002295 9.2e-07 56.2 48 54.2
FAN12G2777 Fragaria x ananassa HOM05D000579 ORTHO05D002295 9.2e-07 56.2 48 54.2
FAN28G1124 Fragaria x ananassa HOM05D000579 ORTHO05D002295 9.2e-07 56.2 50 52.0
Lj4A202T41 Lonicera japonica HOM05D000579 ORTHO05D002295 9.2e-07 56.2 45 60.0
QL06p046315 Quercus lobata HOM05D000579 ORTHO05D002295 9.2e-07 56.2 47 57.4
Ah.03g140930 Amaranthus hybridus HOM05D000579 ORTHO05D002295 1.2e-06 55.8 46 58.7
CSS0017674 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D002295 1.2e-06 55.8 46 52.2
Medtr8g077290 Medicago truncatula HOM05D000579 ORTHO05D002295 1.2e-06 55.8 47 53.2
Oeu005556.1 Olea europaea HOM05D000579 ORTHO05D002295 1.2e-06 55.8 46 58.7
Potri.004G155700 Populus trichocarpa HOM05D000579 ORTHO05D002295 1.2e-06 55.8 48 58.3
GSVIVG01018950001 Vitis vinifera HOM05D000579 ORTHO05D002295 1.2e-06 55.8 45 60.0
Zm00001eb158950 Zea mays HOM05D000579 ORTHO05D002295 1.2e-06 55.8 49 55.1
arahy.Tifrunner.gnm1.ann1.XV2LY8 Arachis hypogaea HOM05D000579 ORTHO05D002295 1.6e-06 55.5 46 54.3
Cc07_g09580 Coffea canephora HOM05D000579 ORTHO05D002295 1.6e-06 55.5 46 56.5
ECA246G2921 Erigeron canadensis HOM05D000579 ORTHO05D002295 1.6e-06 55.5 46 56.5
Gohir.A11G183900 Gossypium hirsutum HOM05D000579 ORTHO05D002295 1.6e-06 55.5 51 54.9
Lalb_Chr09g0322331 Lupinus albus HOM05D000579 ORTHO05D002295 1.6e-06 55.5 52 48.1
MBI10_g41094_MAGBIO Magnolia biondii HOM05D000579 ORTHO05D002295 1.6e-06 55.5 48 54.2
Medtr5g020250 Medicago truncatula HOM05D000579 ORTHO05D002295 1.6e-06 55.5 46 54.3
Sc07g0000390 Simmondsia chinensis HOM05D000579 ORTHO05D002295 1.6e-06 55.5 46 58.7
Cfa004313 Carpinus fangiana HOM05D000579 ORTHO05D002295 2.1e-06 55.1 46 56.5
Dinv13527 Davidia involucrata HOM05D000579 ORTHO05D002295 2.1e-06 55.1 46 56.5
ECA246G3518 Erigeron canadensis HOM05D000579 ORTHO05D002295 2.1e-06 55.1 46 54.3
Glyma.02G056400 Glycine max HOM05D000579 ORTHO05D002295 2.1e-06 55.1 49 51.0
Lsat_1_v5_gn_3_76540 Lactuca sativa HOM05D000579 ORTHO05D002295 2.1e-06 55.1 46 56.5
Potri.009G116900 Populus trichocarpa HOM05D000579 ORTHO05D002295 2.1e-06 55.1 47 57.4
Rhsim08G0117900 Rhododendron simsii HOM05D000579 ORTHO05D002295 2.1e-06 55.1 46 56.5
Sabra04G0103700 Salix brachista HOM05D000579 ORTHO05D002295 2.1e-06 55.1 44 63.6
CiPaw.05G065600 Carya illinoinensis HOM05D000579 ORTHO05D002295 2.7e-06 54.7 49 55.1
Duzib147G0691 Durio zibethinus HOM05D000579 ORTHO05D002295 2.7e-06 54.7 45 57.8
Eucgr.G01660 Eucalyptus grandis HOM05D000579 ORTHO05D002295 2.7e-06 54.7 48 54.2
HanXRQChr16g0530551 Helianthus annuus HOM05D000579 ORTHO05D002295 2.7e-06 54.7 46 56.5
Nn1g04971 Nelumbo nucifera HOM05D000579 ORTHO05D002295 2.7e-06 54.7 46 56.5
Potri.007G024400 Populus trichocarpa HOM05D000579 ORTHO05D002295 2.7e-06 54.7 48 52.1
VMungo0251G2337 Vigna mungo HOM05D000579 ORTHO05D002295 2.7e-06 54.7 47 53.2
CiPaw.05G065300 Carya illinoinensis HOM05D000579 ORTHO05D002295 3.5e-06 54.3 49 57.1
DCAR_025946 Daucus carota HOM05D000579 ORTHO05D002295 3.5e-06 54.3 48 50.0
Nitab4.5_0001960g0030 Nicotiana tabacum HOM05D000579 ORTHO05D002295 3.5e-06 54.3 46 54.3
RhsimUnG0099700 Rhododendron simsii HOM05D000579 ORTHO05D002295 3.5e-06 54.3 45 57.8
Sabra07G0021500 Salix brachista HOM05D000579 ORTHO05D002295 3.5e-06 54.3 51 51.0
Nitab4.5_0000178g0150 Nicotiana tabacum HOM05D000579 ORTHO05D002295 4.6e-06 53.9 46 54.3
Psat4g093680 Pisum sativum HOM05D000579 ORTHO05D002295 4.6e-06 53.9 47 51.1
QL08p012428 Quercus lobata HOM05D000579 ORTHO05D002295 4.6e-06 53.9 48 54.2
SalBow1G0015 Salvia bowleyana HOM05D000579 ORTHO05D002295 4.6e-06 53.9 46 54.3
CsaV3_2G014740 Cucumis sativus L. HOM05D000579 ORTHO05D002295 6.0e-06 53.5 46 54.3
Glyma.16G139100 Glycine max HOM05D000579 ORTHO05D002295 6.0e-06 53.5 49 49.0
Medtr5g020260 Medicago truncatula HOM05D000579 ORTHO05D002295 6.0e-06 53.5 45 53.3
Medtr5g020320 Medicago truncatula HOM05D000579 ORTHO05D002295 6.0e-06 53.5 47 48.9
QL06p046297 Quercus lobata HOM05D000579 ORTHO05D002295 6.0e-06 53.5 48 54.2
Rhsim11G0178200 Rhododendron simsii HOM05D000579 ORTHO05D002295 6.0e-06 53.5 40 62.5
AUR62004059 Chenopodium quinoa HOM05D000579 ORTHO05D002295 7.8e-06 53.1 46 54.3
AUR62007573 Chenopodium quinoa HOM05D000579 ORTHO05D002295 7.8e-06 53.1 46 54.3
ClCG07G008570 Citrullus lanatus HOM05D000579 ORTHO05D002295 7.8e-06 53.1 46 54.3
LjContig00448g0014280 Lotus japonicus HOM05D000579 ORTHO05D002295 7.8e-06 53.1 50 46.0
Phvul.003G254000 Phaseolus vulgaris HOM05D000579 ORTHO05D002295 7.8e-06 53.1 45 55.6
Potri.009G117100 Populus trichocarpa HOM05D000579 ORTHO05D002295 7.8e-06 53.1 47 59.6


User provided reference genes

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