Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 2.4e-37 158.3 78 100.0
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 7.5e-15 83.6 61 72.1
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 7.5e-15 83.6 61 68.9
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 3.7e-14 81.3 62 62.9
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 3.2e-13 78.2 66 60.6
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.0e-12 75.5 59 55.9
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 7.8e-12 73.6 64 48.4
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.0e-11 73.2 67 56.7
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 1.3e-11 72.8 59 57.6
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 1.7e-11 72.4 59 57.6
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 1.7e-11 72.4 59 57.6
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 2.3e-11 72.0 59 57.6
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 2.3e-11 72.0 59 57.6
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 5.0e-11 70.9 59 55.9
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 6.6e-11 70.5 59 55.9
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 6.6e-11 70.5 59 55.9
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.1e-10 69.7 60 60.0
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 1.1e-10 69.7 67 50.7
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 1.5e-10 69.3 52 57.7
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.5e-10 69.3 67 58.2
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.9e-10 68.9 67 58.2
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 3.3e-10 68.2 59 54.2
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 5.6e-10 67.4 59 47.5
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 1.2e-09 66.2 66 50.0
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 1.2e-09 66.2 66 50.0
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.6e-09 65.9 69 53.6
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 4.7e-09 64.3 69 47.8
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 6.2e-09 63.9 66 54.5
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 8.0e-09 63.5 58 62.1
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 8.0e-09 63.5 69 44.9
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 1.0e-08 63.2 58 60.3
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 1.8e-08 62.4 63 49.2
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 1.8e-08 62.4 53 64.2
PGSC0003DMG400030326 Solanum tuberosum HOM05D004372 ORTHO05D004331 1.8e-08 62.4 63 54.0
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 3.1e-08 61.6 56 51.8
FAN16G1658 Fragaria x ananassa HOM05D023252 ORTHO05D025479 5.2e-08 60.8 67 55.2
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 8.9e-08 60.1 67 43.3
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.2e-07 59.7 55 54.5
CAN.G394.69 Capsicum annuum HOM05D004372 ORTHO05D004331 1.5e-07 59.3 66 56.1
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.5e-07 59.3 61 54.1
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 2.0e-07 58.9 61 50.8
Solyc06g076310.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 2.0e-07 58.9 57 56.1
Sopen06g032730 Solanum pennellii HOM05D004372 ORTHO05D004331 2.0e-07 58.9 57 56.1
Atru.chr3.3970 Acer truncatum HOM05D004372 ORTHO05D004331 2.6e-07 58.5 67 55.2
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 2.6e-07 58.5 63 46.0
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.4e-07 58.2 58 62.1
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 3.4e-07 58.2 71 53.5
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 3.4e-07 58.2 62 48.4
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 4.4e-07 57.8 59 45.8
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 4.4e-07 57.8 56 51.8
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 4.4e-07 57.8 65 49.2
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 4.4e-07 57.8 62 50.0
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 5.8e-07 57.4 55 52.7
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.5e-07 57.0 58 50.0
Eucgr.B02319 Eucalyptus grandis HOM05D004372 ORTHO05D004331 9.8e-07 56.6 61 55.7
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 9.8e-07 56.6 60 48.3
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 9.8e-07 56.6 60 48.3
Lj3g0018051 Lotus japonicus HOM05D016115 ORTHO05D004331 1.3e-06 56.2 62 54.8
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.7e-06 55.8 60 50.0
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.7e-06 55.8 60 48.3
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 1.7e-06 55.8 57 50.9
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 1.7e-06 55.8 65 43.1
Phvul.L007143 Phaseolus vulgaris HOM05D016115 ORTHO05D004331 1.7e-06 55.8 61 49.2
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 1.7e-06 55.8 60 50.0
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 2.2e-06 55.5 63 44.4
FAN21G1179 Fragaria x ananassa HOM05D023252 ORTHO05D025479 2.2e-06 55.5 67 52.2
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 2.2e-06 55.5 60 50.0
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.9e-06 55.1 60 48.3
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.7e-06 54.7 59 50.8
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.7e-06 54.7 64 45.3
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 3.7e-06 54.7 57 49.1
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 3.7e-06 54.7 57 49.1
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 4.9e-06 54.3 68 57.4
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 4.9e-06 54.3 53 50.9
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 4.9e-06 54.3 72 48.6
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 6.4e-06 53.9 59 49.2
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 6.4e-06 53.9 61 50.8
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 8.3e-06 53.5 69 56.5
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 8.3e-06 53.5 61 47.5
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 8.3e-06 53.5 59 45.8


User provided reference genes

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