Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 7.1e-47 190.3 97 100.0
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 5.8e-25 117.5 97 70.1
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.6e-22 109.4 103 64.1
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.3e-21 106.3 101 61.4
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 3.9e-21 104.8 103 65.0
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 6.7e-21 104.0 102 59.8
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 8.7e-21 103.6 104 65.4
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.1e-20 103.2 100 62.0
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 5.6e-20 100.9 102 58.8
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 9.6e-20 100.1 101 59.4
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.8e-19 98.6 99 60.6
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 2.8e-19 98.6 101 59.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.8e-19 97.8 102 59.8
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-18 96.7 100 57.0
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 2.4e-18 95.5 99 59.6
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 2.6e-17 92.0 102 59.8
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.6e-17 92.0 102 54.9
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 3.4e-17 91.7 103 58.3
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 5.8e-17 90.9 103 58.3
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 7.6e-17 90.5 100 58.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.0e-16 90.1 100 58.0
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.7e-16 89.4 92 58.7
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.7e-16 89.4 104 54.8
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 1.7e-16 89.4 92 58.7
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.9e-16 88.6 104 54.8
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.8e-16 88.2 98 58.2
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.8e-16 88.2 92 57.6
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 6.5e-16 87.4 103 54.4
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 6.5e-16 87.4 104 54.8
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 6.5e-16 87.4 103 54.4
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 6.5e-16 87.4 103 54.4
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 6.5e-16 87.4 104 54.8
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 6.5e-16 87.4 100 58.0
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 6.5e-16 87.4 104 53.8
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 8.4e-16 87.0 92 57.6
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 8.4e-16 87.0 102 53.9
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 1.1e-15 86.7 96 55.2
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 1.4e-15 86.3 93 57.0
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.4e-15 86.3 103 55.3
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.9e-15 85.9 92 57.6
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.9e-15 85.9 106 55.7
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.5e-15 85.5 100 58.0
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.5e-15 85.5 98 55.1
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.2e-15 85.1 103 56.3
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.2e-15 85.1 92 56.5
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 3.2e-15 85.1 101 52.5
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 5.5e-15 84.3 93 59.1
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.5e-15 84.3 100 57.0
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 7.1e-15 84.0 100 54.0
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 9.3e-15 83.6 91 57.1
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 9.3e-15 83.6 101 54.5
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 2.1e-14 82.4 102 54.9
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.1e-14 82.4 97 54.6
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 7.9e-14 80.5 102 53.9
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 7.9e-14 80.5 92 54.3
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.9e-14 80.5 102 53.9
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 1.0e-13 80.1 100 53.0
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.3e-13 79.7 102 51.0
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 1.3e-13 79.7 102 51.0
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.3e-13 79.7 102 51.0
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.3e-13 79.7 102 51.0
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.3e-13 79.7 91 62.6
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.3e-13 79.7 102 52.9
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.8e-13 79.3 95 54.7
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.8e-13 79.3 93 55.9
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 2.3e-13 79.0 103 53.4
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 3.0e-13 78.6 105 54.3
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.0e-13 78.6 91 56.0
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.9e-13 78.2 92 56.5
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 5.1e-13 77.8 102 52.9
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 6.7e-13 77.4 101 52.5
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 6.7e-13 77.4 103 51.5
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 8.7e-13 77.0 95 54.7
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.1e-12 76.6 107 50.5
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 1.5e-12 76.3 91 54.9
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.5e-12 76.3 93 53.8
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.5e-12 76.3 105 51.4
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.9e-12 75.9 103 50.5
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.9e-12 75.9 102 51.0
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.5e-12 75.5 94 60.6
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.5e-12 75.5 101 49.5
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 3.3e-12 75.1 82 57.3
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 3.3e-12 75.1 91 56.0
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.3e-12 75.1 93 55.9
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 3.3e-12 75.1 92 52.2
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 4.3e-12 74.7 78 57.7
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.7e-12 74.3 88 53.4
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 7.4e-12 73.9 96 54.2
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 7.4e-12 73.9 105 52.4
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 7.4e-12 73.9 91 57.1
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 9.7e-12 73.6 103 49.5
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 9.7e-12 73.6 89 56.2
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.3e-11 73.2 92 50.0
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.6e-11 72.8 91 53.8
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.6e-11 72.8 91 53.8
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 1.6e-11 72.8 91 53.8
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.2e-11 72.4 102 48.0
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.2e-11 72.4 93 54.8
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-11 71.6 91 52.7
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 3.7e-11 71.6 91 50.5
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 3.7e-11 71.6 91 49.5
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.7e-11 71.6 91 52.7
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 3.7e-11 71.6 110 48.2
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 6.3e-11 70.9 96 50.0
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 8.2e-11 70.5 92 50.0
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.4e-10 69.7 91 51.6
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.8e-10 69.3 90 53.3
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 1.8e-10 69.3 92 52.2
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 3.1e-10 68.6 90 53.3
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 4.1e-10 68.2 102 50.0
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 4.1e-10 68.2 105 47.6
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 6.9e-10 67.4 105 47.6
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 9.0e-10 67.0 102 44.1
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 1.2e-09 66.6 85 49.4
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 2.0e-09 65.9 103 43.7
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 2.0e-09 65.9 93 49.5
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 2.6e-09 65.5 92 48.9
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 3.4e-09 65.1 90 48.9
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.4e-09 65.1 87 50.6
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.5e-09 64.7 88 51.1
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 7.6e-09 63.9 102 44.1
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 7.6e-09 63.9 93 51.6
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 2.2e-08 62.4 91 50.5
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.9e-08 62.0 87 48.3
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.9e-08 62.0 93 49.5
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 3.8e-08 61.6 89 47.2
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 3.8e-08 61.6 93 49.5
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 5.0e-08 61.2 94 44.7
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 6.5e-08 60.8 94 46.8
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-07 59.7 77 50.6
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 1.9e-07 59.3 53 60.4
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.5e-07 58.9 79 49.4
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.5e-07 58.9 89 44.9
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 4.2e-07 58.2 87 50.6
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 1.2e-06 56.6 92 48.9
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 2.1e-06 55.8 97 42.3
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.7e-06 55.5 94 45.7
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.7e-06 55.5 94 45.7
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.7e-06 55.5 93 49.5
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 3.6e-06 55.1 94 42.6
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 3.6e-06 55.1 93 44.1


User provided reference genes

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