Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 1.4e-59 232.6 109 100.0
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 2.7e-47 191.8 106 82.1
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 3.6e-47 191.4 109 78.0
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 3.0e-46 188.3 105 82.9
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 8.8e-46 186.8 105 80.0
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 2.6e-45 185.3 101 82.2
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 3.3e-45 184.9 103 81.6
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 5.7e-45 184.1 106 79.2
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 5.7e-45 184.1 106 77.4
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 7.4e-45 183.7 101 84.2
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 7.4e-45 183.7 99 82.8
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 3.7e-44 181.4 104 80.8
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 4.8e-44 181.0 99 82.8
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 8.2e-44 180.3 99 78.8
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 1.1e-43 179.9 99 82.8
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 3.1e-43 178.3 95 82.1
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 2.0e-42 175.6 99 78.8
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 4.5e-42 174.5 99 76.8
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 5.9e-42 174.1 94 80.9
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 5.9e-42 174.1 101 77.2
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 5.9e-42 174.1 96 79.2
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 2.9e-41 171.8 99 75.8
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 5.0e-41 171.0 106 70.8
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 6.5e-41 170.6 101 74.3
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 1.9e-40 169.1 106 70.8
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 2.5e-40 168.7 102 74.5
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 2.5e-40 168.7 101 76.2
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.2e-40 168.3 100 76.0
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 3.2e-40 168.3 100 76.0
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 4.2e-40 167.9 106 69.8
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 4.2e-40 167.9 105 73.3
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 4.2e-40 167.9 91 82.4
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 4.2e-40 167.9 126 62.7
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 7.2e-40 167.2 109 68.8
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 7.2e-40 167.2 99 73.7
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 9.4e-40 166.8 106 69.8
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 9.4e-40 166.8 102 72.5
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 9.4e-40 166.8 108 69.4
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 1.6e-39 166.0 99 73.7
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.6e-39 166.0 96 75.0
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.6e-39 166.0 102 72.5
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 3.6e-39 164.9 100 73.0
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 8.0e-39 163.7 93 77.4
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 8.0e-39 163.7 108 68.5
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.4e-38 162.9 100 74.0
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 1.8e-38 162.5 102 70.6
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.3e-38 162.2 100 74.0
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.3e-38 162.2 99 74.7
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 2.3e-38 162.2 99 72.7
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 6.7e-38 160.6 94 74.5
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 6.7e-38 160.6 100 70.0
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 6.7e-38 160.6 100 73.0
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 6.7e-38 160.6 102 71.6
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 8.8e-38 160.2 98 70.4
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 1.2e-37 159.8 99 71.7
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 2.0e-37 159.1 99 71.7
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 2.6e-37 158.7 104 68.3
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 4.4e-37 157.9 108 67.6
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 2.2e-36 155.6 93 69.9
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 6.3e-36 154.1 103 68.9
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.1e-35 153.3 108 69.4
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-35 153.3 100 71.0
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.4e-35 152.9 104 69.2
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 2.4e-35 152.1 97 69.1
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 2.7e-34 148.7 103 68.0
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 2.7e-34 148.7 173 46.8
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 3.5e-34 148.3 101 64.4
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 7.7e-34 147.1 100 67.0
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.3e-33 146.4 100 67.0
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 3.8e-33 144.8 102 63.7
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 8.5e-33 143.7 105 62.9
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 1.1e-32 143.3 105 61.9
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.1e-32 143.3 87 71.3
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 1.9e-32 142.5 105 61.0
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 2.5e-32 142.1 103 62.1
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 2.5e-32 142.1 103 62.1
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 2.5e-32 142.1 103 62.1
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 7.2e-32 140.6 105 61.9
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 2.1e-31 139.0 105 59.0
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 2.1e-31 139.0 87 70.1
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.7e-31 138.7 75 81.3
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 3.6e-31 138.3 100 63.0
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 4.7e-31 137.9 79 77.2
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 6.1e-31 137.5 75 81.3
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 8.0e-31 137.1 77 77.9
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 1.4e-30 136.3 99 63.6
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 1.8e-30 136.0 105 58.1
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 5.2e-30 134.4 123 54.5
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 5.2e-30 134.4 102 63.7
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 1.2e-29 133.3 100 62.0
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.5e-29 132.9 102 62.7
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 2.6e-29 132.1 100 57.0
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 5.7e-29 131.0 122 52.5
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 5.7e-29 131.0 122 52.5
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 5.7e-29 131.0 78 76.9
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 9.8e-29 130.2 74 78.4
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 1.3e-28 129.8 127 51.2
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 1.3e-28 129.8 97 58.8
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 1.7e-28 129.4 119 53.8
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 2.2e-28 129.0 116 56.0
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 2.2e-28 129.0 93 60.2
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 2.8e-28 128.6 144 45.1
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 6.3e-28 127.5 88 60.2
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 8.3e-28 127.1 122 50.0
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 8.3e-28 127.1 98 59.2
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 3.1e-27 125.2 92 56.5
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 7.0e-27 124.0 75 73.3
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 2.7e-26 122.1 78 69.2
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 4.5e-26 121.3 78 69.2
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 1.7e-25 119.4 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 6.5e-25 117.5 92 52.2
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 8.6e-25 117.1 78 67.9
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 3.3e-24 115.2 73 74.0
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 2.1e-23 112.5 65 78.5
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 2.1e-23 112.5 73 67.1
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 1.4e-22 109.8 61 77.0
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 3.4e-21 105.1 68 69.1
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 2.4e-19 99.0 77 58.4
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 2.4e-19 99.0 74 63.5
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 2.0e-18 95.9 123 41.5
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 1.3e-17 93.2 77 61.0
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 3.3e-16 88.6 48 77.1
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 6.1e-15 84.3 94 39.4
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 2.2e-12 75.9 40 82.5
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 5.4e-11 71.2 40 75.0
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 9.2e-11 70.5 89 37.1
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 7.8e-10 67.4 50 58.0
CDE11G0759 Ceratophyllum demersum HOM05D006227 ORTHO05D129109 2.1e-07 59.3 37 67.6


User provided reference genes

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