Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 100.0
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 99.2
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.1
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 99.2
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 8.3e-42 173.7 118 94.9
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 99.2
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 94.9
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 99.2
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 94.9
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 1.4e-41 172.9 118 97.5
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 94.1
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 94.1
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 98.3
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 98.3
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 94.1
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 97.5
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 94.1
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 92.4
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 96.6
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 7.1e-41 170.6 118 92.4
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 7.1e-41 170.6 118 92.4
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 92.4
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 92.4
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 94.1
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 94.1
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 90.7
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 89.0
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 89.0
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 89.0
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 89.0
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 1.6e-40 169.5 118 96.6
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 92.4
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 92.4
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 92.4
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 88.1
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 94.1
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 94.1
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 96.6
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 91.5
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 3.5e-40 168.3 118 96.6
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 91.5
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 88.1
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 88.1
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.8
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 83.1
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 95.8
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.7e-39 166.0 118 95.8
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 89.8
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 89.8
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 92.4
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 94.1
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 94.1
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 88.1
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 94.1
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 92.4
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 5.1e-39 164.5 116 92.2
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.0
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 89.8
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.0
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.0
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 1.5e-38 162.9 116 83.6
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 92.4
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 83.1
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 7.3e-38 160.6 118 88.1
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 4.7e-37 157.9 118 89.0
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 6.8e-36 154.1 118 72.0
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.2e-32 143.3 118 82.2
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.6e-32 142.9 104 97.1
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 6.0e-32 141.0 101 99.0
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 6.0e-32 141.0 101 94.1
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 7.8e-32 140.6 150 58.7
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 7.8e-32 140.6 116 73.3
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 3.0e-31 138.7 102 96.1
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 6.6e-31 137.5 101 97.0
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 8.6e-31 137.1 118 76.3
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 4.3e-30 134.8 116 75.9
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.2e-29 133.3 103 87.4
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 3.6e-29 131.7 102 91.2
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 7.6e-27 124.0 90 98.9
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 3.2e-25 118.6 90 88.9
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 7.8e-24 114.0 118 66.9
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 3.0e-23 112.1 92 78.3
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 7.3e-22 107.5 108 64.8
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 1.6e-21 106.3 59 98.3
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 2.1e-21 105.9 59 98.3
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 2.1e-21 105.9 59 96.6
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.8e-21 105.5 92 78.3
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 4.8e-21 104.8 58 98.3
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.1e-20 103.6 59 94.9
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 4.0e-20 101.7 59 91.5
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 5.3e-20 101.3 59 93.2
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 5.3e-20 101.3 119 57.1
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 5.3e-20 101.3 118 63.6
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 9.0e-20 100.5 59 93.2
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 6.4e-18 94.4 59 86.4
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 1.5e-14 83.2 59 81.4
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 4.3e-14 81.6 96 74.0
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 9.6e-14 80.5 117 42.7
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.1e-13 79.3 39 100.0
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 2.1e-13 79.3 39 100.0
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 4.8e-13 78.2 39 97.4
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 8.1e-13 77.4 120 42.5
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 2.4e-12 75.9 39 94.9
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 3.4e-11 72.0 47 83.0
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 1.3e-10 70.1 39 84.6


User provided reference genes

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