Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 2.3e-67 258.8 139 100.0
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 1.4e-43 179.9 138 71.7
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 2.3e-43 179.1 150 67.3
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 2.0e-42 176.0 139 70.5
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 5.4e-40 167.9 139 67.6
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 7.0e-40 167.5 140 69.3
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 9.2e-40 167.2 148 62.2
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 9.2e-40 167.2 149 62.4
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 1.6e-39 166.4 139 68.3
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 4.6e-39 164.9 149 61.7
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 1.0e-38 163.7 140 70.7
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 1.7e-38 162.9 139 64.0
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 2.5e-37 159.1 140 67.9
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 3.3e-37 158.7 141 66.7
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 4.3e-37 158.3 146 65.8
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 9.5e-37 157.1 141 66.0
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 2.1e-36 156.0 141 66.0
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 3.6e-36 155.2 139 64.0
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 4.7e-36 154.8 142 61.3
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 8.1e-36 154.1 141 65.2
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 2.3e-35 152.5 141 64.5
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 3.1e-35 152.1 139 64.7
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 4.0e-35 151.8 181 52.5
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 5.2e-35 151.4 139 61.2
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 5.2e-35 151.4 139 64.7
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 6.8e-35 151.0 139 64.0
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 8.9e-35 150.6 139 63.3
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 1.2e-34 150.2 140 63.6
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 2.0e-34 149.4 139 65.5
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 2.0e-34 149.4 139 65.5
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 1.3e-33 146.7 131 66.4
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 2.2e-33 146.0 150 62.0
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 1.1e-32 143.7 132 58.3
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 1.9e-32 142.9 139 62.6
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 2.4e-32 142.5 132 57.6
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 3.2e-32 142.1 141 59.6
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 4.1e-32 141.7 139 62.6
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 4.1e-32 141.7 139 62.6
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 4.1e-32 141.7 139 62.6
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.1e-32 141.7 140 57.9
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 4.1e-32 141.7 130 62.3
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.4e-32 141.4 138 58.7
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 1.2e-31 140.2 142 60.6
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 1.2e-31 140.2 141 61.0
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 2.1e-31 139.4 139 61.2
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 2.1e-31 139.4 130 60.0
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 2.7e-31 139.0 130 60.0
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 7.8e-31 137.5 139 61.2
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 2.3e-30 136.0 99 74.7
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 3.0e-30 135.6 126 64.3
VMungo0720G0585 Vigna mungo HOM05D007571 ORTHO05D009439 3.9e-30 135.2 133 58.6
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 1.5e-29 133.3 132 58.3
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 2.5e-29 132.5 131 59.5
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 3.1e-27 125.6 133 57.1
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 6.8e-27 124.4 140 55.7
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 1.5e-26 123.2 138 57.2
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 1.5e-26 123.2 107 66.4
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 2.6e-26 122.5 168 50.6
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 5.8e-26 121.3 130 60.8
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 7.6e-26 120.9 132 56.1
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 1.1e-24 117.1 130 59.2
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 1.4e-24 116.7 121 55.4
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 1.4e-24 116.7 88 71.6
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 1.9e-24 116.3 130 58.5
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 5.4e-24 114.8 131 51.9
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 5.4e-24 114.8 94 70.2
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 5.4e-24 114.8 94 70.2
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 7.1e-24 114.4 108 62.0
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 7.1e-24 114.4 139 52.5
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 1.2e-23 113.6 88 72.7
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 1.2e-23 113.6 130 53.1
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 2.1e-23 112.8 123 54.5
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 4.6e-23 111.7 123 53.7
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 1.3e-22 110.2 87 65.5
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 2.3e-22 109.4 88 68.2
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 6.6e-22 107.8 82 68.3
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 6.6e-22 107.8 137 49.6
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 1.1e-21 107.1 130 52.3
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 1.1e-21 107.1 131 48.9
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.1e-21 107.1 130 52.3
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 2.5e-21 105.9 114 56.1
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 2.5e-21 105.9 67 74.6
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 2.5e-21 105.9 137 49.6
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 1.2e-20 103.6 91 63.7
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 1.6e-20 103.2 136 48.5
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 4.7e-20 101.7 69 78.3
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 5.8e-18 94.7 61 77.0
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 1.3e-17 93.6 112 49.1
Manes.07G054000 Manihot esculenta HOM05D007571 ORTHO05D009439 1.4e-16 90.1 94 64.9
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 2.4e-16 89.4 65 70.8
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 3.2e-16 89.0 64 73.4
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 3.2e-16 89.0 65 69.2
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 2.1e-15 86.3 59 76.3
Potri.009G086400 Populus trichocarpa HOM05D007571 ORTHO05D009439 7.8e-15 84.3 90 58.9
Aa31LG10G4150 Aethionema arabicum HOM05D007571 ORTHO05D009439 2.5e-13 79.3 98 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 5.6e-13 78.2 153 35.9
CBR_g6736 Chara braunii HOM05D007571 ORTHO05D009439 3.1e-11 72.4 70 52.9
SalBow6G2452 Salvia bowleyana HOM05D007571 ORTHO05D009439 6.9e-11 71.2 46 71.7
Pp3c17_8360 Physcomitrium patens HOM05D007571 ORTHO05D009439 1.4e-08 63.5 95 41.1
Cre02.g086100 Chlamydomonas reinhardtii HOM05D007571 ORTHO05D009439 3.0e-06 55.8 76 39.5


User provided reference genes

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