Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 7.4e-69 263.8 143 100.0
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 1.2e-50 203.4 142 79.6
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 4.5e-50 201.4 144 79.2
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 2.3e-46 189.1 142 76.1
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 6.8e-46 187.6 144 76.4
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 7.5e-45 184.1 144 75.0
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 9.1e-43 177.2 141 73.8
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 7.7e-42 174.1 145 71.7
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 2.3e-41 172.6 144 69.4
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 5.0e-41 171.4 148 69.6
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 6.5e-41 171.0 146 71.2
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 8.6e-41 170.6 144 68.8
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 1.1e-40 170.2 146 71.2
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 1.1e-40 170.2 144 70.1
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 3.3e-40 168.7 146 70.5
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 4.2e-40 168.3 144 67.4
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 9.5e-40 167.2 135 68.9
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 1.2e-39 166.8 146 69.2
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 3.6e-39 165.2 147 68.0
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 3.6e-39 165.2 135 71.9
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 6.1e-39 164.5 144 66.7
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 1.0e-38 163.7 144 65.3
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 1.4e-38 163.3 145 68.3
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 1.8e-38 162.9 143 67.8
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 2.3e-38 162.5 144 65.3
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 3.0e-38 162.2 147 67.3
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 3.0e-38 162.2 143 66.4
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 5.2e-38 161.4 144 68.1
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 6.8e-38 161.0 131 69.5
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 6.8e-38 161.0 144 63.9
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 6.8e-38 161.0 143 66.4
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 1.2e-37 160.2 145 66.9
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 1.5e-37 159.8 144 67.4
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 1.5e-37 159.8 143 65.7
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 2.0e-37 159.5 143 65.7
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 3.4e-37 158.7 143 65.7
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 4.4e-37 158.3 149 68.5
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 5.7e-37 157.9 146 65.1
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 5.7e-37 157.9 142 62.0
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.7e-36 156.4 145 65.5
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 1.7e-36 156.4 144 63.2
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 2.2e-36 156.0 143 65.0
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 2.2e-36 156.0 123 68.3
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 3.7e-36 155.2 146 63.7
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 4.9e-36 154.8 144 63.9
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 4.9e-36 154.8 144 68.1
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 4.9e-36 154.8 145 63.4
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 6.3e-36 154.5 144 63.9
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.8e-35 152.9 144 66.7
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 5.4e-35 151.4 147 63.3
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 7.0e-35 151.0 144 62.5
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 1.6e-34 149.8 145 60.0
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 2.0e-34 149.4 143 64.3
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 2.0e-34 149.4 145 62.1
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 2.7e-34 149.1 111 74.8
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 3.5e-34 148.7 145 62.1
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 4.5e-34 148.3 147 62.6
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 5.9e-34 147.9 142 65.5
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 5.9e-34 147.9 146 61.6
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.0e-33 147.1 131 66.4
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 1.7e-33 146.4 143 58.7
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 2.3e-33 146.0 131 65.6
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 2.9e-33 145.6 147 62.6
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 2.9e-33 145.6 143 60.8
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 3.8e-33 145.2 144 62.5
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 1.1e-32 143.7 147 60.5
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 1.1e-32 143.7 143 55.9
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 5.6e-32 141.4 111 71.2
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 9.5e-32 140.6 145 61.4
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 1.2e-31 140.2 145 62.1
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 1.6e-31 139.8 148 60.1
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 2.1e-31 139.4 152 57.9
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 2.1e-31 139.4 152 57.9
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 2.1e-31 139.4 174 54.6
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 4.7e-31 138.3 148 58.1
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 4.7e-31 138.3 148 58.1
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 6.1e-31 137.9 145 60.0
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 6.1e-31 137.9 143 56.6
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 8.0e-31 137.5 130 61.5
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 1.4e-30 136.7 149 57.7
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 4.0e-30 135.2 153 55.6
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 4.0e-30 135.2 130 60.8
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 5.2e-30 134.8 120 65.0
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 6.8e-30 134.4 144 56.9
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 1.2e-29 133.7 87 80.5
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 1.2e-29 133.7 136 55.9
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 1.2e-29 133.7 145 57.9
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 3.4e-29 132.1 147 55.8
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 7.5e-29 131.0 139 55.4
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 7.5e-29 131.0 149 58.4
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 9.8e-29 130.6 149 55.7
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 1.3e-28 130.2 130 58.5
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 2.2e-28 129.4 90 73.3
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 2.2e-28 129.4 90 71.1
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 2.2e-28 129.4 147 53.7
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 4.9e-28 128.3 150 56.7
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 7.0e-27 124.4 167 50.9
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 9.2e-27 124.0 82 76.8
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 4.6e-26 121.7 116 62.1
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 2.3e-25 119.4 131 56.5
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 4.7e-23 111.7 86 69.8
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 4.4e-21 105.1 77 71.4
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 4.9e-20 101.7 76 63.2
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 2.4e-19 99.4 136 49.3
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 3.2e-19 99.0 91 52.7
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 7.0e-19 97.8 113 53.1
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.5e-16 90.1 109 52.3
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 3.3e-16 89.0 117 42.7
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 5.6e-16 88.2 86 53.5
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 3.6e-15 85.5 122 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 1.2e-13 80.5 82 48.8
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 1.2e-13 80.5 132 40.2
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 1.5e-13 80.1 55 76.4
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 4.4e-13 78.6 81 48.1
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 7.5e-13 77.8 85 54.1
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 1.5e-08 63.5 34 91.2
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 2.5e-08 62.8 53 58.5


User provided reference genes

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