Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 6.7e-78 293.9 144 100.0
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 5.7e-77 290.8 144 97.9
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 5.7e-77 290.8 144 97.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.2e-76 288.9 144 97.2
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.2
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 96.5
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 95.8
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 6.3e-76 287.3 144 96.5
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 6.3e-76 287.3 144 96.5
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 8.2e-76 287.0 144 95.8
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 8.2e-76 287.0 144 96.5
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.1e-75 286.6 144 96.5
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.4e-75 286.2 144 96.5
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.4e-75 286.2 144 96.5
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.4e-75 286.2 144 97.2
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.4e-75 286.2 143 97.2
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.1
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 2.4e-75 285.4 144 96.5
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.4e-75 285.4 144 95.8
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.4e-75 285.4 142 96.5
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.4e-75 285.4 142 96.5
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 3.1e-75 285.0 144 95.8
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 95.8
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 95.1
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 95.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 5.3e-75 284.3 142 94.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.3e-75 284.3 142 95.8
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.1
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.8
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 93.8
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.1
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 93.8
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 94.4
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 94.4
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 94.4
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 2.7e-74 282.0 143 94.4
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 94.4
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 93.8
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 94.4
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 5.9e-74 280.8 141 95.0
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 94.4
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 94.4
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 94.4
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 94.4
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 92.4
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 92.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.1
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 91.7
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 91.7
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 94.4
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 92.4
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 91.0
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 6.5e-73 277.3 141 93.6
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 92.4
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 91.0
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 91.7
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 91.0
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 91.7
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.9e-72 275.8 142 93.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.9
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 91.0
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 90.3
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.6e-71 271.6 154 89.0
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 4.7e-71 271.2 138 91.3
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.8e-70 269.2 170 79.4
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.8e-70 269.2 142 90.8
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.0e-70 268.5 167 80.2
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 4.0e-70 268.1 142 90.1
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 3.4e-69 265.0 138 89.1
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 7.5e-69 263.8 143 88.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 9.8e-69 263.5 138 87.7
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.7e-68 262.7 142 88.0
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 2.8e-68 261.9 140 88.6
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 3.7e-68 261.5 142 85.9
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 87.2
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 3.7e-68 261.5 140 89.3
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.8e-68 261.2 140 87.1
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 6.3e-68 260.8 140 87.9
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 6.3e-68 260.8 140 87.1
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 6.3e-68 260.8 140 87.1
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 8.3e-68 260.4 130 94.6
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.4e-67 259.6 140 87.1
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.4e-67 259.6 137 89.1
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 87.1
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.6e-66 256.1 208 66.8
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 3.5e-66 255.0 140 85.0
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.9e-66 254.2 140 84.3
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 7.7e-66 253.8 142 84.5
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.0e-65 253.4 138 84.8
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.3e-65 253.1 203 66.5
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.3e-65 252.3 140 84.3
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.3e-65 252.3 140 84.3
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 8.6e-65 250.4 140 82.9
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 8.6e-65 250.4 140 82.9
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.5e-64 249.6 156 80.1
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 85.0
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 85.0
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 85.0
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 85.0
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 84.3
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.2e-63 246.5 168 73.2
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 86.1
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 1.8e-62 242.7 138 81.2
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 2.6e-61 238.8 142 82.4
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 2.4e-59 232.3 129 83.7
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 7.0e-59 230.7 140 79.3
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.6e-58 229.6 144 71.5
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 4.7e-55 218.0 142 69.0
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.7e-52 209.5 122 81.1
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.9e-52 208.8 114 86.0
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.4e-51 206.5 160 66.2
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.4e-51 205.7 138 65.9
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.2e-50 203.4 136 65.4
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.7e-49 199.5 120 82.5
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 4.3e-48 194.9 99 93.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 3.6e-47 191.8 97 91.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.8e-45 184.5 118 78.8
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 6.6e-33 144.4 74 95.9
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.2e-29 133.7 74 87.8
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 2.0e-29 132.9 74 86.5
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 4.4e-29 131.7 148 47.3
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.9e-29 130.6 74 85.1
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 7.1e-27 124.4 140 50.7
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 8.7e-17 90.9 43 93.0
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 3.4e-13 79.0 161 34.2
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.2e-12 76.3 117 38.5
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 3.8e-12 75.5 157 31.2
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 3.8e-12 75.5 53 66.0
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 1.6e-10 70.1 44 75.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 9.6e-08 60.8 133 30.8
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 9.6e-08 60.8 36 69.4
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 9.0e-06 54.3 83 37.3


User provided reference genes

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