Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.8e-86 322.4 150 100.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 5.8e-64 247.7 148 75.0
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 5.6e-59 231.1 148 73.6
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.2e-58 229.9 142 76.1
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.6e-58 229.6 146 75.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.1e-58 229.2 136 77.2
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.1e-58 229.2 137 76.6
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 4.7e-58 228.0 137 75.2
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 6.2e-58 227.6 148 70.3
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 8.1e-58 227.3 137 75.9
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.4e-57 225.7 143 72.0
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 6.8e-57 224.2 148 69.6
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 6.8e-57 224.2 139 73.4
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.9e-57 223.8 139 73.4
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-56 223.4 139 73.4
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.2e-56 223.4 145 73.8
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.0e-56 222.6 136 75.7
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 3.4e-56 221.9 117 84.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 4.4e-56 221.5 145 70.3
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.8e-56 221.1 139 72.7
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.8e-56 221.1 139 71.9
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 5.8e-56 221.1 139 74.8
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 7.6e-56 220.7 117 84.6
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.9e-55 218.8 148 70.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 8.4e-55 217.2 145 72.4
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.4e-54 216.5 132 73.5
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.9e-54 216.1 124 75.8
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.9e-54 216.1 136 73.5
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.9e-54 216.1 135 74.8
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 2.4e-54 215.7 137 72.3
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.4e-54 215.7 145 69.0
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.4e-54 215.7 136 73.5
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 4.1e-54 214.9 140 70.0
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 4.1e-54 214.9 150 69.3
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 4.1e-54 214.9 117 82.9
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.1e-54 214.2 132 72.7
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 7.1e-54 214.2 147 68.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 9.2e-54 213.8 123 75.6
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.6e-53 213.0 138 73.9
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-53 212.6 149 65.1
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.5e-53 211.8 148 66.9
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.6e-53 211.5 148 66.2
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 4.6e-53 211.5 147 66.0
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.0e-53 211.1 148 66.9
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 6.0e-53 211.1 146 66.4
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 6.0e-53 211.1 137 72.3
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.0e-52 210.3 136 69.9
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.0e-52 210.3 148 67.6
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.7e-52 209.5 150 66.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.3e-52 209.1 138 70.3
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.3e-52 209.1 146 65.8
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 3.9e-52 208.4 148 66.2
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 5.1e-52 208.0 135 68.9
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 6.6e-52 207.6 136 69.1
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.6e-52 207.6 135 68.9
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 8.6e-52 207.2 135 69.6
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.1e-51 206.8 135 70.4
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.1e-51 206.8 139 68.3
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.9e-51 206.1 147 64.6
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.9e-51 206.1 128 71.1
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.5e-51 205.7 124 72.6
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.5e-51 205.7 136 67.6
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 3.3e-51 205.3 132 71.2
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 4.3e-51 204.9 135 68.9
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 5.6e-51 204.5 150 62.7
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.6e-51 204.5 147 63.3
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.6e-51 204.5 133 69.9
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.6e-51 204.5 132 71.2
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 7.3e-51 204.1 137 68.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 9.6e-51 203.8 136 69.9
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 9.6e-51 203.8 147 62.6
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 9.6e-51 203.8 135 69.6
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 9.6e-51 203.8 138 68.1
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.6e-50 203.0 136 69.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.6e-50 203.0 136 69.1
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.6e-50 203.0 137 66.4
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 4.7e-50 201.4 138 68.8
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 6.2e-50 201.1 136 68.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 6.2e-50 201.1 126 70.6
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.1e-49 200.3 137 64.2
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.4e-49 199.9 136 69.1
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.4e-49 199.9 137 64.2
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 3.1e-49 198.7 145 64.1
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 6.9e-49 197.6 149 63.1
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.2e-48 196.8 117 74.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.3e-47 193.4 123 73.2
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.7e-47 193.0 171 56.1
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 2.2e-47 192.6 143 65.7
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 4.9e-47 191.4 136 64.0
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.1e-46 190.3 121 67.8
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.4e-46 189.9 136 66.2
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.9e-46 189.5 139 64.7
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.1e-45 186.0 110 75.5
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.1e-45 186.0 138 62.3
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.0e-44 183.7 122 64.8
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.0e-44 183.7 122 64.8
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.3e-44 182.6 138 61.6
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.5e-43 179.9 122 61.5
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.3e-42 176.8 120 60.8
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.0e-41 171.8 145 59.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 2.5e-35 152.5 91 73.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.6e-34 149.8 82 76.8
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 5.3e-33 144.8 138 50.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 4.5e-32 141.7 123 59.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.2e-31 139.4 116 53.4
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.9e-29 131.0 82 69.5
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 4.3e-27 125.2 135 50.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-26 123.6 90 57.8
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 4.8e-26 121.7 117 45.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 6.9e-25 117.9 149 47.7
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 6.9e-25 117.9 93 55.9
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.2e-24 117.1 93 55.9
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.5e-24 116.7 121 51.2
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 2.6e-24 115.9 74 64.9
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.1e-21 106.3 56 82.1
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 6.0e-21 104.8 93 45.2
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.0e-20 104.0 90 48.9
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.6e-18 96.7 87 48.3
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-16 90.1 91 42.9
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 5.9e-16 88.2 96 39.6
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-13 80.5 61 55.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.6e-13 79.0 74 58.1
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 5.1e-12 75.1 56 58.9
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-09 67.4 73 54.8
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 2.0e-08 63.2 39 69.2
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.3e-07 60.5 40 60.0
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 3.8e-07 58.9 70 38.6
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.4e-06 57.0 38 63.2
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 5.5e-06 55.1 62 33.9
PRCOL_00004218 Prasinoderma coloniale HOM05D002499 ORTHO05D002812 7.2e-06 54.7 61 37.7
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 9.4e-06 54.3 62 33.9


User provided reference genes

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