Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.4e-89 332.0 156 100.0
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.0e-75 285.8 179 79.9
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 4.7e-69 264.6 178 74.2
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.8e-66 255.0 178 70.8
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.8e-66 255.0 178 70.8
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 6.4e-66 254.2 178 70.2
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.4e-65 253.1 179 69.8
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.1e-64 249.2 178 70.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.1e-64 249.2 178 70.8
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.5e-64 248.4 179 69.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.5e-64 248.4 179 69.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.5e-64 248.4 178 69.7
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.5e-64 248.4 179 68.2
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.0e-64 247.7 179 69.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.3e-63 246.5 179 68.7
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-63 246.5 178 69.7
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.3e-63 245.7 179 67.6
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.0e-63 245.4 179 68.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 6.6e-63 244.2 178 67.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 6.6e-63 244.2 178 68.5
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.6e-63 244.2 178 68.0
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 6.6e-63 244.2 178 68.0
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 8.7e-63 243.8 178 68.5
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.1e-62 243.4 180 67.2
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.5e-62 243.0 180 68.3
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.5e-62 243.0 178 68.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.5e-62 243.0 178 67.4
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.9e-62 242.7 178 66.9
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.5e-62 242.3 178 68.0
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.5e-62 242.3 178 66.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.5e-62 242.3 178 67.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.3e-62 241.5 178 66.9
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 4.3e-62 241.5 179 67.6
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.3e-62 241.5 179 68.7
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.3e-62 241.5 179 68.2
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 5.6e-62 241.1 178 69.1
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 7.3e-62 240.7 179 65.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 7.3e-62 240.7 179 65.9
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 7.3e-62 240.7 179 65.4
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 7.3e-62 240.7 178 66.9
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 7.3e-62 240.7 179 67.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 7.3e-62 240.7 179 65.9
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.6e-62 240.4 178 66.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 9.6e-62 240.4 178 66.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 9.6e-62 240.4 179 67.6
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.6e-61 239.6 178 66.3
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.1e-61 239.2 179 65.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 2.1e-61 239.2 179 65.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.1e-61 239.2 179 65.4
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.1e-61 239.2 179 67.0
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.8e-61 238.8 178 68.0
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.8e-61 238.8 178 66.9
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.8e-61 238.8 178 66.9
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.6e-61 238.4 178 65.7
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.8e-61 238.0 179 67.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.2e-61 237.7 179 64.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.1e-60 236.9 178 65.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.1e-60 236.9 177 66.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.4e-60 236.5 179 64.8
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-60 236.5 178 68.0
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.4e-60 236.5 178 66.9
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.8e-60 236.1 178 66.9
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.8e-60 236.1 178 64.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.4e-60 235.7 179 64.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.4e-60 235.7 178 64.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.4e-60 235.7 178 65.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.1e-60 235.3 178 66.9
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.0e-60 235.0 179 64.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 4.0e-60 235.0 179 67.0
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 5.3e-60 234.6 179 64.8
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 5.3e-60 234.6 179 64.2
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.3e-60 234.6 177 65.5
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.3e-60 234.6 178 65.7
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 5.3e-60 234.6 178 64.0
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 6.9e-60 234.2 179 63.1
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 6.9e-60 234.2 179 65.4
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.2e-59 233.4 181 62.4
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.2e-59 233.4 178 65.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.2e-59 233.4 179 66.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.5e-59 233.0 178 65.2
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.0e-59 232.6 178 65.2
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.0e-59 232.6 178 64.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.6e-59 232.3 179 63.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.6e-59 232.3 178 64.6
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.6e-59 232.3 178 64.0
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.5e-59 231.5 178 63.5
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 5.8e-59 231.1 178 65.2
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.6e-59 230.7 178 63.5
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 7.6e-59 230.7 200 60.0
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.6e-59 230.7 179 63.7
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.6e-59 230.7 179 62.0
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 7.6e-59 230.7 178 63.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 9.9e-59 230.3 178 63.5
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 9.9e-59 230.3 179 65.9
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 9.9e-59 230.3 180 65.0
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 9.9e-59 230.3 178 64.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 9.9e-59 230.3 179 65.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 9.9e-59 230.3 179 65.9
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 9.9e-59 230.3 178 63.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.3e-58 229.9 178 64.0
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-58 229.9 179 65.9
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.7e-58 229.6 179 63.1
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.7e-58 229.6 181 64.6
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.2e-58 229.2 180 63.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.2e-58 229.2 179 66.5
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-58 228.8 178 63.5
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.9e-58 228.8 179 63.1
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.9e-58 228.0 178 62.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 4.9e-58 228.0 179 65.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.4e-58 227.6 178 62.9
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.1e-57 226.9 179 64.8
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-57 226.5 178 62.4
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.9e-57 226.1 178 64.0
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.9e-57 226.1 196 61.2
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-57 225.7 179 65.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-57 225.7 179 64.2
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-57 225.7 179 64.2
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.2e-57 225.3 179 60.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.4e-57 224.6 196 61.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 7.1e-57 224.2 180 62.8
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 9.3e-57 223.8 180 61.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.6e-56 223.0 177 61.6
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.7e-56 222.2 184 62.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.5e-56 221.9 178 60.7
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.3e-55 219.9 180 61.1
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.3e-55 219.9 177 61.0
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.7e-55 217.2 178 60.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.1e-54 216.9 179 60.3
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.5e-54 216.5 178 61.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.3e-53 213.4 179 61.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.7e-53 211.8 177 61.6
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.8e-53 211.5 177 60.5
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 8.1e-53 210.7 178 59.6
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 9.9e-51 203.8 180 57.2
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.3e-50 203.4 178 59.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-49 200.3 116 76.7
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-49 199.9 114 78.1
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.9e-49 199.5 114 78.1
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 9.3e-49 197.2 261 45.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 6.0e-48 194.5 181 54.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.3e-47 192.6 160 60.6
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 6.2e-45 184.5 178 55.1
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.2e-45 184.1 109 73.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 8.2e-45 184.1 178 49.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 3.1e-44 182.2 180 50.6
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 4.0e-44 181.8 115 72.2
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 5.3e-44 181.4 178 51.1
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.6e-43 177.6 153 64.1
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 5.5e-41 171.4 178 55.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 2.3e-39 166.0 191 48.2
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.3e-37 160.2 141 57.4
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.5e-35 151.8 96 68.8
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.2e-33 145.2 179 46.4
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.9e-32 141.0 119 58.8
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.2e-29 132.9 187 40.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 3.1e-28 129.0 178 41.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 9.1e-28 127.5 180 40.6
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.5e-27 125.2 110 60.0
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-25 119.8 67 82.1
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.2e-25 119.0 67 80.6
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.5e-25 118.2 67 80.6
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.7e-24 115.2 67 80.6
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.0e-23 114.0 68 73.5
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.8e-23 113.2 67 76.1
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.0e-23 112.5 110 54.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 3.9e-23 112.1 270 31.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-22 110.5 60 81.7
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.7e-19 97.8 111 46.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.7e-11 71.2 104 43.3
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 7.7e-11 71.2 104 43.3
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.0e-10 70.9 104 42.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.5e-09 66.2 36 83.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 4.0e-07 58.9 39 71.8
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.0e-07 58.9 86 39.5
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.6e-06 56.2 86 37.2


User provided reference genes

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