Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 5.4e-90 334.3 172 100.0
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 5.1e-72 274.6 168 82.7
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 5.6e-71 271.2 166 83.1
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.6e-70 269.6 178 78.7
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 2.8e-70 268.9 174 80.5
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 8.1e-70 267.3 174 81.0
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 1.4e-69 266.5 172 76.7
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 6.8e-69 264.2 172 76.7
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 8.9e-69 263.8 172 76.7
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 1.2e-68 263.5 162 79.6
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 2.0e-68 262.7 179 78.2
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 2.6e-68 262.3 170 77.6
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 2.6e-68 262.3 170 77.6
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 2.6e-68 262.3 166 82.5
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 7.6e-68 260.8 178 76.4
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 7.6e-68 260.8 164 79.3
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 1.7e-67 259.6 171 75.4
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 2.2e-67 259.2 170 75.3
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 2.9e-67 258.8 172 73.8
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 3.8e-67 258.5 168 77.4
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.4e-66 256.5 172 72.7
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 2.4e-66 255.8 168 76.2
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 3.2e-66 255.4 172 73.8
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.6e-65 253.1 172 74.4
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.6e-65 253.1 172 74.4
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 2.1e-65 252.7 171 73.1
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 2.7e-65 252.3 172 74.4
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 2.7e-65 252.3 172 74.4
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 4.6e-65 251.5 170 72.9
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 6.0e-65 251.1 172 75.6
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 7.8e-65 250.8 172 73.8
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 7.8e-65 250.8 172 73.8
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 3.0e-64 248.8 170 74.7
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 3.0e-64 248.8 170 74.7
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 3.0e-64 248.8 170 74.7
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 3.9e-64 248.4 170 72.4
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 5.1e-64 248.1 169 74.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 6.6e-64 247.7 172 72.7
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 8.6e-64 247.3 170 74.1
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 8.6e-64 247.3 170 72.4
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 8.6e-64 247.3 169 76.9
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.5e-63 246.5 154 76.6
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.9e-63 246.1 170 72.4
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 2.5e-63 245.7 168 74.4
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 2.5e-63 245.7 162 74.7
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 5.6e-63 244.6 164 72.6
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 5.6e-63 244.6 164 72.6
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 5.6e-63 244.6 164 72.6
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 5.6e-63 244.6 172 72.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 7.3e-63 244.2 164 72.6
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 9.6e-63 243.8 163 75.5
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 2.1e-62 242.7 157 77.7
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 2.1e-62 242.7 157 77.7
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.8e-62 242.3 149 79.9
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.4e-61 240.0 172 72.1
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 1.4e-61 240.0 170 69.4
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 2.4e-61 239.2 168 70.8
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 3.1e-61 238.8 168 72.6
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 3.1e-61 238.8 170 71.8
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.0e-61 238.4 168 70.2
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 5.2e-61 238.0 172 71.5
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 5.2e-61 238.0 166 72.3
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 1.2e-60 236.9 168 69.0
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.5e-60 236.5 170 70.0
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 1.5e-60 236.5 169 71.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 3.4e-60 235.3 159 74.2
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.4e-60 235.0 141 79.4
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 4.4e-60 235.0 152 78.3
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 9.9e-60 233.8 159 73.6
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 1.3e-59 233.4 163 70.6
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.7e-59 233.0 170 72.4
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 2.9e-59 232.3 174 69.0
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 2.9e-59 232.3 172 69.2
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 2.9e-59 232.3 165 75.2
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 2.9e-59 232.3 165 74.5
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 3.8e-59 231.9 159 73.6
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.8e-59 231.9 167 70.7
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.8e-59 231.9 167 70.7
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 3.8e-59 231.9 169 71.0
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 8.4e-59 230.7 167 70.7
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.1e-58 230.3 167 69.5
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 3.2e-58 228.8 159 73.0
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 3.2e-58 228.8 167 68.9
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 3.2e-58 228.8 167 68.9
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 5.4e-58 228.0 170 69.4
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 7.1e-58 227.6 141 80.1
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 7.1e-58 227.6 171 66.1
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 9.3e-58 227.3 173 67.1
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 1.6e-57 226.5 172 66.3
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 2.1e-57 226.1 175 68.6
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 2.1e-57 226.1 164 69.5
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.7e-57 225.7 160 71.9
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 3.5e-57 225.3 170 67.1
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 1.7e-56 223.0 151 72.2
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.7e-56 223.0 159 68.6
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 3.0e-56 222.2 218 55.0
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 5.1e-56 221.5 170 67.6
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 6.6e-56 221.1 159 67.9
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 1.5e-55 219.9 162 70.4
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 4.3e-55 218.4 167 66.5
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 1.6e-54 216.5 147 76.2
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 2.8e-54 215.7 176 64.2
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.6e-52 209.1 116 87.9
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 7.6e-52 207.6 174 64.9
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 8.4e-51 204.1 143 74.1
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 8.4e-51 204.1 135 75.6
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 2.7e-49 199.1 167 58.7
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 2.3e-48 196.1 144 72.2
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 7.4e-47 191.0 144 68.8
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 1.3e-46 190.3 152 66.4
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 2.1e-46 189.5 142 67.6
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.8e-45 186.4 141 68.8
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 5.3e-45 184.9 164 59.1
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 4.5e-44 181.8 140 65.7
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 4.5e-44 181.8 140 65.7
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 4.5e-44 181.8 141 67.4
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 5.8e-44 181.4 107 83.2
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 3.8e-43 178.7 144 59.7
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 1.1e-42 177.2 142 64.1
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 4.2e-42 175.3 162 59.3
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 4.2e-42 175.3 142 65.5
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 4.6e-41 171.8 139 64.0
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.0e-40 170.6 169 58.6
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 6.7e-40 167.9 125 68.0
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 1.2e-36 157.1 121 66.1
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 2.9e-35 152.5 167 49.1
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 2.9e-35 152.5 136 58.8
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.8e-35 152.1 146 58.9
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.8e-35 152.1 146 58.9
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 2.5e-34 149.4 96 78.1
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 1.2e-33 147.1 98 73.5
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.6e-33 146.7 98 73.5
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 2.7e-33 146.0 89 78.7
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 7.9e-33 144.4 81 87.7
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 8.7e-32 141.0 158 53.8
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 2.9e-27 125.9 153 46.4
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 2.7e-25 119.4 115 58.3
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 1.3e-24 117.1 159 40.3
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 3.0e-24 115.9 143 45.5
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 5.1e-24 115.2 64 85.9
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 5.3e-21 105.1 84 64.3
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 1.2e-20 104.0 157 37.6
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.7e-17 92.8 87 58.6
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 2.2e-11 73.2 72 52.8
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 7.2e-10 68.2 79 48.1
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 5.2e-08 62.0 33 90.9
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 8.8e-08 61.2 51 58.8
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-07 60.8 54 55.6
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 4.4e-07 58.9 27 96.3
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 7.4e-07 58.2 38 65.8
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 9.7e-07 57.8 69 46.4
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 1.3e-06 57.4 27 92.6
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 1.3e-06 57.4 27 92.6
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 1.7e-06 57.0 69 44.9
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 2.8e-06 56.2 121 32.2
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 3.7e-06 55.8 67 44.8
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 8.2e-06 54.7 67 41.8


User provided reference genes

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