Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.4e-72 275.8 179 100.0
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 5.9e-23 111.7 200 45.5
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-22 110.5 173 41.0
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 2.2e-22 109.8 178 43.3
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.9e-22 109.4 175 41.1
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 5.0e-22 108.6 186 38.7
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 1.5e-21 107.1 172 38.4
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-21 106.7 175 40.6
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 5.5e-21 105.1 175 40.6
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-20 104.0 179 38.0
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.6e-20 103.6 171 38.0
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.8e-19 100.1 177 37.3
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.8e-19 100.1 179 36.3
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 2.3e-19 99.8 181 35.9
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 6.8e-19 98.2 166 39.2
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 1.2e-18 97.4 169 36.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.4e-18 95.9 167 38.9
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 7.5e-18 94.7 177 34.5
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 9.8e-18 94.4 170 38.8
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.3e-17 94.0 167 35.9
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.3e-17 94.0 173 38.2
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.3e-17 94.0 167 37.7
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.8e-17 92.8 165 38.2
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.7e-17 92.4 178 35.4
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.8e-17 92.0 183 34.4
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.8e-17 92.0 173 35.3
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 1.1e-16 90.9 178 36.0
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 7.0e-16 88.2 180 33.9
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 7.0e-16 88.2 168 38.1
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.5e-15 85.9 166 36.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 4.5e-15 85.5 182 34.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.7e-14 83.6 186 32.8
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 2.9e-14 82.8 168 32.7
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 3.8e-14 82.4 166 35.5
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.0e-14 82.0 166 40.4
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.5e-14 81.6 166 39.2
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 6.5e-14 81.6 154 35.1
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 1.1e-13 80.9 169 35.5
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.5e-13 80.5 168 32.1
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.2e-13 79.3 177 32.8
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 4.2e-13 79.0 171 34.5
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 5.5e-13 78.6 129 35.7
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 9.4e-13 77.8 174 32.2
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 3.6e-12 75.9 184 36.4
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 6.1e-12 75.1 163 30.7
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 3.0e-11 72.8 137 38.0
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 4.0e-11 72.4 172 37.8
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 5.2e-11 72.0 127 37.0
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 5.2e-11 72.0 173 33.5
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 5.2e-11 72.0 172 30.2
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 1.2e-10 70.9 173 30.6
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.2e-10 70.9 164 32.3
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.5e-10 70.5 191 29.3
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.5e-10 70.5 185 30.3
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.6e-10 69.7 164 33.5
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.6e-10 69.7 167 31.7
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.4e-10 68.9 190 28.4
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.4e-10 68.9 190 27.9
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 5.7e-10 68.6 190 28.4
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 7.5e-10 68.2 169 32.5
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.7e-09 67.0 179 29.6
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 2.8e-09 66.2 161 31.1
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.7e-09 65.9 177 30.5
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.7e-09 65.9 173 28.9
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 3.7e-09 65.9 184 32.6
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 6.3e-09 65.1 191 29.8
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 6.3e-09 65.1 174 38.5
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.3e-09 65.1 177 29.9
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.3e-09 65.1 173 30.6
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.3e-09 65.1 173 30.6
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.1e-08 64.3 171 32.7
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 2.4e-08 63.2 128 31.2
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 2.4e-08 63.2 184 29.9
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 3.1e-08 62.8 174 29.3
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 3.1e-08 62.8 189 25.9
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.1e-08 62.4 173 29.5
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.4e-08 62.0 167 30.5
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.0e-08 61.6 178 28.7
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.0e-08 61.6 167 29.9
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 9.1e-08 61.2 181 28.7
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 9.1e-08 61.2 178 27.0
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 9.1e-08 61.2 169 29.0
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.2e-07 60.8 66 47.0
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-07 60.8 182 28.6
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 2.0e-07 60.1 173 30.6
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-07 59.7 165 29.1
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.5e-07 59.3 182 28.0
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 3.5e-07 59.3 173 29.5
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 4.5e-07 58.9 171 31.6
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 4.5e-07 58.9 178 29.8
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.9e-07 58.5 174 30.5
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 7.7e-07 58.2 175 27.4
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.7e-07 58.2 60 50.0
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 7.7e-07 58.2 174 31.0
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 7.7e-07 58.2 177 27.7
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 7.7e-07 58.2 172 29.1
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-06 57.4 165 27.9
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.3e-06 57.4 165 26.1
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 1.7e-06 57.0 59 52.5
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.3e-06 56.6 65 46.2
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.3e-06 56.6 66 47.0
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.8e-06 55.8 170 32.4
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 3.8e-06 55.8 181 27.1
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.0e-06 55.5 66 45.5
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 5.0e-06 55.5 177 27.7
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.6e-06 55.1 68 45.6
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 8.6e-06 54.7 62 48.4


User provided reference genes

Program Settings