Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 3.4e-98 361.7 184 100.0
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.2e-79 300.1 184 81.5
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 7.8e-79 297.4 184 81.0
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 7.8e-79 297.4 184 80.4
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.2e-76 290.0 181 79.6
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 2.8e-76 288.9 185 79.5
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.1e-75 285.4 181 76.2
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 5.2e-75 284.6 184 74.5
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.5e-74 283.1 182 74.2
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 4.4e-74 281.6 182 73.6
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 7.6e-74 280.8 181 75.1
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.9e-73 278.9 184 75.0
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 1.4e-72 276.6 184 73.4
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.4e-72 275.8 184 72.8
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.4e-72 275.8 184 72.8
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 3.2e-72 275.4 184 74.5
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 3.2e-72 275.4 181 73.5
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 4.1e-72 275.0 182 72.5
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 5.4e-72 274.6 184 72.3
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 7.1e-72 274.2 184 72.3
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.2e-71 273.5 180 73.3
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 2.1e-71 272.7 182 73.6
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 2.1e-71 272.7 180 72.8
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 2.1e-71 272.7 180 71.7
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 2.7e-71 272.3 183 72.7
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 2.7e-71 272.3 179 74.3
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 3.5e-71 271.9 182 72.0
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 3.5e-71 271.9 182 72.0
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 3.5e-71 271.9 181 73.5
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 4.6e-71 271.6 184 71.7
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 4.6e-71 271.6 180 72.8
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 6.0e-71 271.2 185 70.3
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 6.0e-71 271.2 184 71.2
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 6.0e-71 271.2 181 74.6
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 7.8e-71 270.8 184 71.2
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 7.8e-71 270.8 180 72.8
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 7.8e-71 270.8 182 71.4
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.0e-70 270.4 182 71.4
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.7e-70 269.6 185 73.5
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 2.3e-70 269.2 185 73.5
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 2.3e-70 269.2 180 73.9
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.3e-70 269.2 185 70.3
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 3.9e-70 268.5 184 70.7
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 3.9e-70 268.5 184 70.7
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 3.9e-70 268.5 184 70.7
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 3.9e-70 268.5 178 72.5
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.9e-70 268.5 179 72.6
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 5.1e-70 268.1 180 72.2
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 6.6e-70 267.7 181 70.7
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 6.6e-70 267.7 178 72.5
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 8.6e-70 267.3 181 71.8
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 8.6e-70 267.3 178 73.6
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 8.6e-70 267.3 178 73.6
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 8.6e-70 267.3 182 72.0
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.1e-69 266.9 180 71.1
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 1.1e-69 266.9 180 73.3
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.5e-69 266.5 184 71.7
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 2.5e-69 265.8 180 71.7
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 2.5e-69 265.8 178 72.5
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.5e-69 265.8 176 72.2
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.5e-69 265.8 184 69.0
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.3e-69 265.4 182 70.9
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 3.3e-69 265.4 180 72.2
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 9.6e-69 263.8 182 65.9
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.2e-68 263.5 180 71.7
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.6e-68 263.1 181 72.4
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 3.6e-68 261.9 182 67.6
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 3.6e-68 261.9 183 68.3
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 8.1e-68 260.8 180 70.6
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.4e-67 260.0 176 71.6
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.8e-67 259.6 180 69.4
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.4e-67 259.2 179 69.3
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 3.1e-67 258.8 176 71.6
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 4.0e-67 258.5 179 71.5
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 5.2e-67 258.1 183 68.9
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 1.2e-66 256.9 179 69.8
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 2.0e-66 256.1 179 70.9
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 5.8e-66 254.6 180 68.9
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 7.6e-66 254.2 182 67.6
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 7.6e-66 254.2 174 67.8
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 9.9e-66 253.8 182 67.6
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.2e-65 252.7 179 67.6
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.8e-65 251.9 177 69.5
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 8.4e-65 250.8 180 68.3
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.1e-64 250.4 182 65.4
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 1.9e-64 249.6 164 74.4
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 7.1e-64 247.7 180 66.1
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 6.0e-63 244.6 180 66.1
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 2.3e-62 242.7 183 65.6
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 3.9e-62 241.9 178 65.2
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 5.1e-62 241.5 178 65.2
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 5.1e-62 241.5 184 64.7
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 8.7e-62 240.7 182 65.4
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.1e-61 240.4 189 63.0
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 5.6e-61 238.0 181 63.0
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 4.8e-60 235.0 168 67.9
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.8e-60 235.0 171 65.5
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 5.4e-56 221.5 178 61.8
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.1e-55 219.5 184 57.6
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.0e-54 215.7 194 56.7
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 8.7e-54 214.2 202 54.5
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.3e-52 210.3 203 54.2
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 1.9e-48 196.4 161 62.7
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 9.3e-48 194.1 158 63.3
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.8e-46 189.9 142 67.6
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 4.3e-45 185.3 173 51.4
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 5.6e-45 184.9 137 65.7
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 4.9e-41 171.8 116 73.3
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 8.4e-41 171.0 106 77.4
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 3.2e-40 169.1 185 45.9
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 3.0e-38 162.5 178 46.1
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 1.8e-35 153.3 173 46.8
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.1e-35 152.5 181 45.3
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.4e-34 149.1 188 42.6
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 8.4e-33 144.4 107 67.3
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 8.4e-33 144.4 175 41.1
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.1e-32 144.1 180 44.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.8e-27 126.7 86 65.1
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.4e-27 126.3 170 37.1
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.7e-25 120.2 155 44.5
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.4e-24 117.1 95 58.9
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.3e-20 101.7 75 66.7
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.4e-16 90.5 92 50.0
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.8e-11 73.6 45 73.3
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 2.5e-08 63.2 156 26.9
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 7.2e-08 61.6 138 29.0
GSVIVG01015401001 Vitis vinifera HOM05D003111 ORTHO05D003502 1.2e-07 60.8 167 27.5
Prupe.7G229800 Prunus persica HOM05D003111 ORTHO05D003502 2.1e-07 60.1 162 24.7
Aqoxy7G01698 Aquilegia oxysepala HOM05D003111 ORTHO05D003502 1.0e-06 57.8 162 25.3
RcHm_v2.0_Chr3g0459631 Rosa chinensis HOM05D000172 ORTHO05D000273 1.8e-06 57.0 145 29.0
Sed0000940 Sechium edule HOM05D003111 ORTHO05D003502 1.8e-06 57.0 155 27.7
Glyma.09G189900 Glycine max HOM05D003111 ORTHO05D003502 2.3e-06 56.6 137 28.5
PSO782G1457 Papaver somniferum HOM05D003111 ORTHO05D003502 5.2e-06 55.5 146 27.4
Hund26161 Selenicereus undatus HOM05D003111 ORTHO05D003502 6.7e-06 55.1 145 27.6


User provided reference genes

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