Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.6e-106 389.4 192 100.0
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 7.1e-91 337.4 192 85.4
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 7.1e-91 337.4 186 87.1
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.5e-88 328.9 187 85.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.3e-88 328.6 192 81.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.6e-87 325.1 192 80.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.8e-87 324.7 187 83.4
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 5.3e-86 321.2 192 80.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.3e-84 316.6 187 82.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.8e-84 315.1 188 78.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.9e-84 314.7 192 80.2
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 8.4e-84 313.9 175 85.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-83 313.2 192 78.1
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.9e-83 312.8 186 82.8
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 7.1e-83 310.8 190 76.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.3e-83 310.5 187 77.5
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.1e-82 309.3 187 77.0
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-82 308.9 186 79.0
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 7.9e-82 307.4 172 85.5
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-81 307.0 186 78.0
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.0e-81 307.0 187 79.1
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 3.9e-81 305.1 174 82.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 5.1e-81 304.7 186 79.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 5.1e-81 304.7 186 78.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 8.7e-81 303.9 182 78.6
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.5e-80 303.1 186 77.4
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.5e-80 302.4 186 76.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.3e-80 302.0 182 78.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 4.3e-80 301.6 186 77.4
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 5.6e-80 301.2 191 75.4
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 7.4e-80 300.8 173 83.8
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 7.4e-80 300.8 182 79.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.3e-79 300.1 186 76.3
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.3e-79 300.1 186 76.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.3e-79 300.1 189 76.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.6e-79 299.7 186 76.3
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.6e-79 299.7 189 76.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.1e-79 299.3 187 76.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.1e-79 299.3 189 75.7
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.7e-79 298.5 187 77.0
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.2e-79 297.7 173 81.5
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 8.1e-79 297.4 186 75.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 8.1e-79 297.4 191 76.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-78 297.0 186 75.3
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.1e-78 297.0 182 77.5
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.1e-78 297.0 175 81.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.4e-78 296.6 191 76.4
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-78 296.2 174 79.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.4e-78 295.8 186 75.3
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.1e-78 295.4 187 75.4
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.0e-78 295.0 190 74.2
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 4.0e-78 295.0 187 76.5
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.0e-78 295.0 190 74.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 6.9e-78 294.3 190 74.2
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.0e-77 292.7 173 80.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.4e-77 292.0 173 79.2
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.5e-77 291.6 190 74.7
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 7.6e-77 290.8 187 77.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 9.9e-77 290.4 174 78.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.3e-76 290.0 179 76.0
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-76 289.7 173 80.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-76 289.7 173 80.3
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.7e-76 289.7 173 79.8
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.2e-76 289.3 163 83.4
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.9e-76 288.9 172 79.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.9e-76 288.9 174 79.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 6.4e-76 287.7 187 73.3
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.4e-76 287.7 173 79.2
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.1e-75 287.0 181 76.8
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.4e-75 286.6 186 73.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.4e-75 285.8 186 73.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.4e-75 285.8 186 73.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.2e-75 285.4 190 71.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.2e-74 283.5 173 76.3
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.5e-74 282.0 186 72.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.0e-74 281.2 173 77.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 7.9e-74 280.8 168 82.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.9e-73 278.5 187 72.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.7e-73 277.7 182 72.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.1e-72 276.9 174 76.4
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.4e-72 274.2 173 73.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-71 273.5 186 69.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.6e-71 273.1 173 74.0
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.8e-71 272.3 170 77.6
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.1e-70 270.4 173 72.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.1e-70 268.9 168 76.8
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.1e-70 268.9 185 66.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.2e-69 266.9 162 79.0
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-69 266.5 187 69.0
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.0e-69 266.2 173 75.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.0e-69 266.2 165 73.9
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.6e-69 265.8 156 81.4
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 5.8e-69 264.6 165 77.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.8e-69 264.6 174 70.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.3e-68 263.5 169 74.0
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.7e-68 263.1 170 71.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.2e-68 262.7 170 74.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 3.8e-68 261.9 179 69.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.4e-68 260.8 176 73.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-67 260.0 170 71.8
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 5.5e-67 258.1 172 73.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.1e-66 256.1 173 71.7
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.7e-66 255.8 173 67.6
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.6e-66 255.0 170 68.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-65 253.8 170 69.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.0e-65 253.8 173 68.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.0e-65 252.3 158 75.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.0e-65 252.3 168 71.4
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 3.9e-65 251.9 170 71.2
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.1e-64 250.4 174 68.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.1e-64 250.4 169 67.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.5e-64 250.0 170 68.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.5e-64 249.2 169 73.4
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-63 246.9 168 69.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.7e-63 245.4 170 70.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 4.8e-63 245.0 168 69.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 4.8e-63 245.0 168 69.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.1e-62 243.8 170 66.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.4e-62 243.4 167 70.7
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.3e-62 241.5 165 70.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.3e-62 241.5 159 71.7
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.0e-61 239.6 171 67.3
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.4e-61 238.8 165 69.1
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.5e-61 238.4 134 81.3
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.9e-61 238.0 160 70.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.0e-60 237.3 168 67.3
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.3e-60 236.9 160 71.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.3e-60 236.9 160 67.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.2e-59 231.9 173 66.5
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 7.2e-59 231.1 168 65.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.6e-58 229.9 176 66.5
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.1e-58 229.6 134 76.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-57 225.7 161 69.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 5.1e-57 224.9 186 61.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.3e-56 222.2 168 66.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.3e-56 222.2 168 66.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.3e-56 221.9 151 69.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 9.7e-56 220.7 160 62.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.7e-56 220.7 161 68.3
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 6.9e-54 214.5 163 65.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-53 213.0 138 77.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-53 212.6 175 63.4
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.6e-53 212.6 156 70.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.4e-53 212.2 159 64.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.4e-53 212.2 178 58.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.9e-53 211.5 159 61.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.2e-51 205.3 160 60.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.5e-51 204.9 161 65.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.2e-50 203.8 160 63.1
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-50 202.2 189 54.5
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.0e-49 200.7 189 56.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.0e-49 200.7 135 74.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-48 196.8 164 56.1
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.3e-48 195.7 162 63.6
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.8e-47 192.6 129 73.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.6e-45 186.0 129 70.5
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.0e-44 184.1 177 55.4
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.0e-44 181.8 159 57.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.4e-43 177.6 169 55.0
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.7e-42 176.0 169 54.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.6e-42 175.6 125 67.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.8e-41 173.3 157 50.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-39 167.2 116 72.4
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.7e-36 156.8 90 82.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-34 149.4 177 48.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.0e-33 147.5 94 70.2
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.3e-33 146.4 97 71.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.8e-31 139.4 91 65.9
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.2e-31 137.9 150 44.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-30 137.5 93 73.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.4e-25 120.6 73 74.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.3e-20 104.0 72 72.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.6e-18 97.1 79 58.2
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-14 82.4 69 58.0
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.8e-12 75.9 106 42.5
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.5e-11 73.2 80 50.0
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.8e-10 69.7 175 30.9
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.0e-09 65.9 36 77.8
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 5.2e-09 65.5 36 77.8
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 2.0e-08 63.5 32 87.5
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 4.4e-08 62.4 178 27.0
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.7e-07 60.5 184 28.3
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 2.2e-07 60.1 32 84.4
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 6.4e-07 58.5 32 81.2
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-06 55.1 39 61.5


User provided reference genes

Program Settings