Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 2.8e-109 398.7 210 100.0
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 1.9e-89 332.8 209 81.8
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.1e-88 329.3 213 82.2
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.6e-88 328.6 213 82.2
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.4e-87 326.6 213 81.7
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 3.7e-85 318.5 219 78.5
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 6.4e-85 317.8 210 80.0
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 8.3e-85 317.4 209 79.9
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 1.9e-84 316.2 211 77.7
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 1.2e-83 313.5 212 78.3
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 6.0e-83 311.2 208 79.3
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.0e-82 310.5 208 78.8
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 1.0e-82 310.5 215 78.1
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.7e-82 309.7 208 78.8
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 7.3e-81 304.3 210 78.1
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.6e-80 303.1 210 76.2
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.6e-80 303.1 210 75.7
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 4.7e-80 301.6 208 77.9
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 4.7e-80 301.6 210 76.2
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 8.0e-80 300.8 208 77.9
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 8.0e-80 300.8 208 76.4
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 6.8e-79 297.7 208 77.4
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 8.9e-79 297.4 224 72.8
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 8.9e-79 297.4 192 81.2
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 1.2e-78 297.0 211 74.9
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 1.2e-78 297.0 208 76.9
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 5.8e-78 294.7 209 76.1
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 1.3e-77 293.5 237 68.8
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 3.7e-77 292.0 209 73.2
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.7e-77 292.0 193 77.7
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 1.1e-76 290.4 214 71.5
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 1.4e-76 290.0 208 75.0
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 1.9e-76 289.7 233 69.1
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 3.2e-76 288.9 214 71.5
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 3.2e-76 288.9 217 72.8
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 1.6e-75 286.6 214 71.0
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 2.1e-75 286.2 218 72.5
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 2.7e-75 285.8 214 71.0
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 2.7e-75 285.8 212 71.7
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 3.5e-75 285.4 217 70.5
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 3.5e-75 285.4 207 72.0
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 4.6e-75 285.0 214 70.6
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 4.6e-75 285.0 217 70.0
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 6.0e-75 284.6 207 72.0
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 7.8e-75 284.3 210 72.4
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 3.0e-74 282.3 207 71.0
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 3.0e-74 282.3 200 74.0
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 5.1e-74 281.6 205 72.7
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.9e-73 279.6 214 68.7
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 3.3e-73 278.9 207 72.9
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 5.6e-73 278.1 213 70.9
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 5.6e-73 278.1 159 88.7
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 5.6e-73 278.1 199 71.9
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 7.3e-73 277.7 222 67.6
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 2.1e-72 276.2 159 88.1
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 2.8e-72 275.8 220 67.7
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.8e-72 275.8 156 89.1
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 3.6e-72 275.4 214 68.7
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 4.7e-72 275.0 210 69.0
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 6.2e-72 274.6 209 70.3
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 6.2e-72 274.6 199 70.9
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 8.1e-72 274.2 223 66.4
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 5.2e-71 271.6 224 66.1
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 9.9e-70 267.3 210 69.5
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 1.7e-69 266.5 219 65.8
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 2.2e-69 266.2 207 69.1
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 3.7e-69 265.4 288 56.9
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 4.9e-69 265.0 179 74.9
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 4.9e-69 265.0 213 67.1
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.9e-68 263.1 189 71.4
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 3.2e-68 262.3 219 65.3
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 9.2e-68 260.8 197 70.1
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 3.5e-67 258.8 170 80.0
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 3.5e-67 258.8 209 66.5
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 3.5e-67 258.8 197 69.5
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.0e-66 257.3 157 84.7
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 6.6e-66 254.6 200 68.5
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 1.5e-65 253.4 221 62.9
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.3e-65 252.3 149 85.2
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 2.1e-64 249.6 214 65.4
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 3.6e-64 248.8 195 68.7
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 6.2e-64 248.1 209 64.6
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 1.8e-63 246.5 152 82.9
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 2.4e-63 246.1 193 65.3
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 3.1e-63 245.7 192 67.7
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.2e-61 239.6 217 63.1
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 1.4e-60 236.9 207 63.8
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 4.2e-60 235.3 154 77.9
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 7.1e-60 234.6 158 75.9
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 3.9e-58 228.8 152 80.3
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.9e-58 228.8 150 77.3
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 6.6e-58 228.0 154 76.0
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 5.6e-57 224.9 151 74.8
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 1.6e-56 223.4 166 69.9
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 6.9e-55 218.0 213 60.1
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.6e-54 216.1 157 70.1
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 1.4e-52 210.3 156 66.0
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 2.3e-50 203.0 189 57.1
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 2.8e-48 196.1 122 84.4
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.1e-47 194.1 185 60.0
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 6.7e-42 174.9 161 65.2
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 8.7e-42 174.5 200 55.5
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 4.0e-39 165.6 173 51.4
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 5.3e-39 165.2 123 71.5
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 7.9e-35 151.4 118 71.2
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 1.9e-33 146.7 90 80.0
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 3.3e-33 146.0 176 48.3
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 3.7e-32 142.5 180 47.2
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.3e-29 134.0 81 82.7
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 3.8e-29 132.5 79 83.5
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 4.6e-27 125.6 171 46.2
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 3.3e-25 119.4 82 73.2
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.4e-23 114.0 108 62.0
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 6.9e-23 111.7 72 79.2
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 3.2e-20 102.8 99 59.6
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 1.2e-19 100.9 65 72.3
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 6.1e-19 98.6 236 31.8
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 4.8e-16 89.0 61 77.0
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 8.2e-16 88.2 85 62.4
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 3.2e-12 76.3 86 54.7
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 2.1e-11 73.6 96 41.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 6.7e-10 68.6 66 50.0
MCO03G486 Micromonas commoda HOM05D006789 ORTHO05D008460 1.5e-06 57.4 239 27.2


User provided reference genes

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