Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 4.1e-112 408.3 241 100.0
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.1e-67 260.8 199 73.4
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 3.3e-61 239.2 217 64.5
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.3e-61 239.2 226 61.5
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 9.6e-61 237.7 191 72.3
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.6e-60 236.9 200 68.5
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 3.6e-60 235.7 199 67.8
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.8e-59 233.4 195 68.7
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 5.3e-59 231.9 199 66.3
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.5e-58 230.3 205 67.3
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.6e-58 229.6 200 68.5
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 5.8e-58 228.4 201 67.2
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.8e-58 228.4 220 62.3
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 5.8e-58 228.4 189 70.4
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 7.6e-58 228.0 204 66.7
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.3e-57 227.3 201 65.2
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.2e-57 226.5 205 64.4
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 2.9e-57 226.1 223 62.3
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.9e-57 225.3 200 64.5
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 8.4e-57 224.6 198 66.7
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.9e-56 223.4 199 64.8
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.4e-56 223.0 217 62.2
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.2e-56 222.2 217 61.3
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 9.3e-56 221.1 199 64.8
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.6e-55 220.3 198 65.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 4.6e-55 218.8 213 60.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 6.0e-55 218.4 179 71.5
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 6.0e-55 218.4 224 60.7
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 6.0e-55 218.4 193 66.3
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.3e-54 217.2 200 61.5
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.8e-54 216.9 165 73.9
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.3e-54 216.5 218 59.6
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 3.9e-54 215.7 199 64.3
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 5.1e-54 215.3 196 60.2
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.5e-53 213.8 206 59.2
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 2.5e-53 213.0 208 60.6
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.3e-53 212.2 200 60.5
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 7.4e-53 211.5 206 58.3
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 2.8e-52 209.5 215 58.6
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 6.2e-52 208.4 194 61.9
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 8.1e-52 208.0 200 60.5
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.8e-51 206.8 193 62.7
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 2.4e-51 206.5 197 61.9
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 2.4e-51 206.5 206 58.3
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 3.1e-51 206.1 199 61.3
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 4.0e-51 205.7 192 60.4
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 5.3e-51 205.3 193 63.7
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 9.0e-51 204.5 192 62.0
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 9.0e-51 204.5 205 58.0
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 1.5e-50 203.8 255 53.3
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 2.6e-50 203.0 193 61.1
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 3.4e-50 202.6 224 54.5
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.4e-50 202.6 202 59.9
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.4e-50 202.6 191 62.3
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 4.5e-50 202.2 225 54.7
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 5.8e-50 201.8 192 62.0
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.0e-49 201.1 196 57.1
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 1.3e-49 200.7 198 59.1
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.7e-49 200.3 191 61.8
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 2.2e-49 199.9 208 54.3
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 3.8e-49 199.1 194 60.3
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.4e-48 197.2 195 60.5
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.5e-48 196.4 210 57.6
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.6e-47 193.7 223 52.9
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 2.7e-47 193.0 199 60.8
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.6e-47 192.2 198 58.1
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.6e-47 192.2 194 58.2
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.8e-46 190.3 203 59.6
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 2.3e-46 189.9 198 58.1
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.3e-46 189.9 239 51.0
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 2.3e-46 189.9 167 65.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.1e-45 187.6 197 64.0
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 1.1e-45 187.6 233 51.5
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.9e-45 186.8 198 56.6
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.5e-45 186.4 192 56.8
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.5e-45 186.4 193 56.5
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.3e-44 184.1 198 55.6
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 2.1e-44 183.3 194 56.7
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 3.7e-44 182.6 187 57.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 4.8e-44 182.2 199 58.8
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 6.3e-44 181.8 182 59.9
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 8.2e-44 181.4 230 52.6
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 1.4e-43 180.6 196 56.1
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.4e-43 179.9 218 54.6
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.4e-43 179.9 183 60.1
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 3.1e-43 179.5 209 54.5
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 3.1e-43 179.5 186 60.2
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 3.1e-43 179.5 186 60.2
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 5.3e-43 178.7 185 57.3
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.5e-42 177.2 190 53.2
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.0e-42 176.8 178 60.1
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 2.0e-42 176.8 178 60.1
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.6e-42 176.4 189 56.6
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 5.9e-42 175.3 200 56.5
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.0e-41 174.5 194 53.6
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.7e-41 173.7 189 55.0
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 2.2e-41 173.3 199 52.8
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.4e-40 170.6 185 58.9
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.6e-39 167.2 190 54.2
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 2.7e-39 166.4 200 53.5
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 3.6e-39 166.0 187 55.1
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 6.1e-39 165.2 186 55.4
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.0e-38 164.5 183 55.7
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.8e-38 163.7 194 56.7
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.9e-38 162.5 200 53.0
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 3.9e-38 162.5 190 50.0
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.9e-37 160.2 191 58.1
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.9e-37 160.2 189 51.9
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 5.7e-37 158.7 157 60.5
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 7.4e-37 158.3 198 55.6
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.3e-36 157.5 187 58.3
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.3e-36 157.5 187 58.3
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.3e-36 157.5 187 58.3
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.6e-36 157.1 187 51.9
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 3.7e-36 156.0 180 52.8
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 6.3e-36 155.2 150 63.3
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 3.1e-35 152.9 154 59.1
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 5.9e-34 148.7 199 54.3
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.0e-33 147.9 143 56.6
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.1e-32 144.4 185 54.6
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.9e-32 143.7 143 58.7
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 3.2e-32 142.9 185 54.6
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.2e-31 141.0 230 46.5
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 2.3e-30 136.7 158 55.7
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 2.0e-29 133.7 173 55.5
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 2.0e-29 133.7 123 62.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 2.0e-29 133.7 103 77.7
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 3.3e-29 132.9 224 40.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.2e-26 124.4 124 56.5
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.5e-26 124.0 127 60.6
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.7e-25 120.6 119 63.0
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 1.1e-24 117.9 244 38.9
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 4.4e-21 105.9 92 67.4
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 7.4e-21 105.1 120 58.3
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 8.2e-20 101.7 112 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.6e-18 96.7 144 45.8
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.1e-16 91.3 183 36.6
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 4.2e-16 89.4 85 68.2
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.6e-15 87.4 105 49.5
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.3e-14 83.6 85 52.9
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 8.8e-14 81.6 108 48.1
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.7e-12 77.4 81 60.5
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.2e-12 77.0 71 56.3
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.8e-12 76.6 127 35.4
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 5.3e-11 72.4 147 38.1
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 2.0e-10 70.5 114 43.9
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.8e-09 66.2 103 41.7
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.9e-08 63.9 70 48.6
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 4.7e-07 59.3 49 63.3


User provided reference genes

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