Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 6.1e-143 510.8 250 100.0
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 6.4e-100 367.9 250 72.8
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 3.6e-87 325.5 258 64.0
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 4.7e-87 325.1 252 63.5
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 4.4e-85 318.5 254 63.4
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.3e-84 317.0 258 62.4
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 5.4e-83 311.6 232 67.7
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 3.5e-82 308.9 193 74.6
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 6.0e-82 308.1 249 62.7
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 5.1e-81 305.1 235 66.4
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 6.6e-81 304.7 246 63.0
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 8.7e-81 304.3 240 62.9
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.5e-80 302.8 213 66.2
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 3.3e-80 302.4 257 61.1
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 4.3e-80 302.0 231 61.5
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 3.6e-79 298.9 227 66.1
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 3.6e-79 298.9 261 59.8
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 3.4e-77 292.4 230 62.6
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 4.5e-77 292.0 259 57.5
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.8e-77 291.6 265 56.2
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 6.4e-76 288.1 229 64.2
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 2.4e-75 286.2 255 58.8
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.4e-75 285.0 253 57.7
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 9.3e-75 284.3 257 57.6
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 2.7e-74 282.7 227 62.1
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 4.6e-74 282.0 241 57.3
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 3.9e-73 278.9 226 59.3
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 5.1e-73 278.5 238 56.3
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 5.1e-73 278.5 183 69.9
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.1e-73 278.5 230 57.8
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 2.5e-72 276.2 178 70.8
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 4.3e-72 275.4 209 59.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 5.6e-72 275.0 260 53.8
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 7.4e-72 274.6 193 65.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 1.3e-71 273.9 209 59.3
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 2.1e-71 273.1 202 66.3
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 3.6e-71 272.3 233 59.7
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.1e-70 270.8 230 55.7
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.8e-70 270.0 184 65.8
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.8e-70 270.0 209 58.9
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 2.4e-70 269.6 227 56.4
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 9.0e-70 267.7 258 53.5
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 2.0e-69 266.5 181 67.4
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.0e-69 266.5 230 59.6
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 2.0e-69 266.5 224 57.6
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 9.9e-69 264.2 234 56.0
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 2.2e-68 263.1 176 66.5
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 3.8e-68 262.3 202 58.4
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 6.4e-68 261.5 180 65.0
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 8.4e-68 261.2 187 63.6
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 1.9e-67 260.0 173 69.9
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.9e-67 260.0 212 59.9
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.2e-67 259.2 242 52.9
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 4.2e-67 258.8 174 68.4
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 4.2e-67 258.8 172 68.6
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 7.1e-67 258.1 190 61.6
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 9.3e-67 257.7 241 51.5
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 9.3e-67 257.7 191 58.6
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.6e-66 256.9 210 56.7
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.7e-66 256.1 170 67.6
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 4.6e-66 255.4 172 69.2
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 4.6e-66 255.4 220 56.4
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 6.0e-66 255.0 180 65.0
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.8e-65 253.4 187 62.6
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 2.5e-64 249.6 186 60.2
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 3.3e-64 249.2 181 59.7
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 5.6e-64 248.4 240 51.2
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 9.6e-64 247.7 182 61.5
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.3e-63 247.3 182 61.0
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.6e-63 246.9 227 53.7
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.6e-63 246.9 227 53.7
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.1e-63 246.5 171 65.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.2e-63 245.0 230 56.1
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 8.1e-63 244.6 179 60.3
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.4e-62 243.8 173 61.3
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.4e-62 243.8 174 63.8
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 4.0e-62 242.3 231 50.6
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.0e-61 240.0 227 52.9
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.0e-61 240.0 227 52.9
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 2.6e-61 239.6 243 50.2
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 3.4e-61 239.2 234 50.4
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 7.6e-61 238.0 170 62.4
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.0e-60 237.7 223 52.9
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 5.5e-59 231.9 165 63.6
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 1.3e-57 227.3 184 54.3
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 3.9e-57 225.7 157 65.0
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.3e-55 220.7 170 57.1
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 2.1e-55 219.9 170 57.1
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-54 217.6 204 55.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.4e-54 217.2 219 52.1
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 2.2e-52 209.9 209 51.7
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 6.5e-44 181.8 126 69.0
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 4.6e-42 175.6 147 57.1
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 7.9e-42 174.9 176 43.2
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 2.3e-41 173.3 153 60.1
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 3.3e-40 169.5 122 64.8
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 2.4e-38 163.3 177 52.5
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 8.8e-33 144.8 257 35.8
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 7.0e-30 135.2 177 36.2
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 8.5e-28 128.3 144 41.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 9.4e-27 124.8 114 49.1
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 2.8e-23 113.2 166 35.5
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.7e-23 112.8 219 36.1
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.0e-21 107.1 82 52.4
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-20 104.4 84 58.3
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.2e-20 103.6 82 52.4
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 3.8e-20 102.8 181 33.7
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 8.5e-20 101.7 180 32.8
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.9e-19 100.5 84 58.3
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 7.2e-19 98.6 168 34.5
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.2e-18 97.8 162 32.1
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 6.1e-18 95.5 168 34.5
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 5.2e-17 92.4 167 32.9
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 5.2e-17 92.4 179 29.6
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 1.5e-16 90.9 163 31.9
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 2.6e-16 90.1 165 30.3
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 5.7e-16 89.0 157 30.6
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 7.5e-16 88.6 106 38.7
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-15 87.8 62 67.7
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.7e-15 87.4 158 32.9
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.2e-15 87.0 158 32.9
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 2.2e-15 87.0 116 45.7
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 3.7e-15 86.3 169 32.0
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.7e-15 86.3 112 42.9
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 6.3e-15 85.5 162 29.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 6.3e-15 85.5 165 28.5
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.1e-14 84.7 162 29.0
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 3.1e-14 83.2 166 29.5
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 7.0e-14 82.0 151 31.1
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 7.0e-14 82.0 166 31.3
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 9.1e-14 81.6 204 26.5
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 1.6e-13 80.9 165 30.9
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 2.7e-13 80.1 179 29.6
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 7.7e-13 78.6 169 28.4
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.3e-12 77.8 134 29.9
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 1.7e-12 77.4 178 24.7
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.9e-12 76.6 162 29.0
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 3.8e-12 76.3 151 27.2
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 8.6e-12 75.1 166 28.9
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 8.6e-12 75.1 72 45.8
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.1e-11 74.7 124 32.3
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 3.2e-11 73.2 161 28.0
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 5.5e-11 72.4 159 25.2
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 7.2e-11 72.0 135 28.9
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 7.2e-11 72.0 159 25.8
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.2e-10 71.2 140 30.7
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 1.6e-10 70.9 107 31.8
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.6e-10 70.9 167 26.9
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 6.1e-10 68.9 144 29.9
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 6.1e-10 68.9 168 26.2
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 6.1e-10 68.9 139 30.9
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 2.3e-09 67.0 167 26.3
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 6.8e-09 65.5 166 25.9
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 8.8e-09 65.1 167 27.5
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 8.8e-09 65.1 163 25.2
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 3.4e-08 63.2 36 66.7
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 3.4e-08 63.2 159 25.8
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 7.5e-08 62.0 169 26.6
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.7e-07 59.7 178 24.7
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 4.9e-07 59.3 178 24.7


User provided reference genes

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