Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.3e-165 586.3 290 100.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 8.2e-99 364.4 254 70.5
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.1e-98 364.0 254 68.9
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.2e-97 360.5 255 69.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.0e-96 357.5 255 68.2
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.8e-96 355.5 254 68.5
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 2.1e-94 349.7 255 66.7
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.0e-93 347.4 255 65.9
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.0e-93 345.9 255 66.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 5.1e-93 345.1 255 67.1
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.3e-92 342.4 249 67.9
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.4e-92 341.3 255 67.1
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 7.4e-92 341.3 255 65.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.7e-91 339.0 255 66.7
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.4e-90 336.3 254 65.7
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.2e-89 334.0 257 63.4
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 2.0e-89 333.2 255 66.3
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.3e-88 330.5 257 63.8
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.3e-88 330.5 255 65.1
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-87 327.4 255 65.1
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.1e-87 327.4 255 63.5
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.2e-87 325.9 271 63.1
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 9.4e-87 324.3 256 65.2
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.0e-85 320.9 239 66.5
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.4e-85 320.5 242 64.9
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.8e-85 317.8 256 64.5
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.1e-82 310.8 255 59.2
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 7.0e-82 308.1 226 65.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.0e-81 306.6 254 57.9
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 7.7e-81 304.7 254 60.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 6.5e-80 301.6 253 59.7
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.5e-80 301.6 254 59.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.5e-79 298.5 226 64.2
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 4.7e-78 295.4 255 58.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.0e-77 294.3 190 74.7
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.4e-77 293.9 233 61.8
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 3.0e-77 292.7 241 61.4
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 4.0e-77 292.4 254 55.5
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 5.2e-77 292.0 257 58.4
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 8.8e-77 291.2 239 61.5
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-76 290.4 254 57.5
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 2.8e-75 286.2 255 56.5
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.4e-74 283.9 254 56.3
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.1e-74 282.7 254 55.9
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.1e-74 282.7 254 55.1
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 7.0e-74 281.6 254 55.5
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 7.0e-74 281.6 254 55.5
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.2e-73 280.8 257 56.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 2.7e-73 279.6 241 59.8
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 3.5e-73 279.3 254 55.9
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 4.5e-73 278.9 255 58.0
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.0e-72 277.7 241 59.3
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.7e-72 276.9 255 55.3
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.2e-72 276.6 261 54.4
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 2.2e-72 276.6 241 58.1
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.9e-72 276.2 254 56.7
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.8e-72 275.8 257 55.6
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.0e-72 275.4 234 58.1
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.1e-71 274.2 255 55.7
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.5e-71 273.9 254 54.7
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.5e-71 273.9 252 55.2
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.5e-71 273.9 255 54.9
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.9e-71 273.5 181 74.6
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.5e-71 273.1 164 80.5
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.5e-71 273.1 239 56.1
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 4.2e-71 272.3 256 53.1
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 5.5e-71 271.9 236 59.3
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 5.5e-71 271.9 264 55.3
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 5.5e-71 271.9 233 56.7
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.2e-70 270.8 254 54.3
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.7e-70 269.6 254 54.7
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.6e-70 269.2 237 57.4
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.4e-69 267.3 254 54.3
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.4e-69 267.3 254 53.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.8e-69 266.9 256 52.7
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.3e-69 266.5 241 53.5
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.0e-69 266.2 211 62.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.0e-69 265.8 256 52.7
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.2e-69 265.4 236 58.9
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 6.8e-69 265.0 254 50.0
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.2e-68 264.2 261 52.5
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.2e-68 264.2 239 57.7
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.2e-68 264.2 254 53.1
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.6e-68 263.1 254 53.5
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 3.4e-68 262.7 257 52.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.4e-68 262.3 257 52.5
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.4e-68 262.3 255 54.5
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 9.8e-68 261.2 239 55.2
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.3e-67 260.8 257 52.5
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.3e-67 260.8 239 57.3
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.7e-67 260.4 256 50.4
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.7e-67 260.4 216 61.1
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.2e-67 260.0 246 54.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 4.8e-67 258.8 255 52.5
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.3e-67 258.5 233 54.9
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.3e-67 258.5 233 54.9
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 6.3e-67 258.5 255 53.7
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 6.3e-67 258.5 255 53.7
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.1e-66 257.7 250 51.6
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.4e-66 255.4 237 53.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 7.0e-66 255.0 243 51.9
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.7e-64 250.4 226 54.9
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.2e-64 250.0 249 51.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 2.2e-64 250.0 250 51.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.9e-64 249.6 254 49.2
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 6.5e-64 248.4 227 53.3
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 6.5e-64 248.4 239 52.7
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 7.2e-63 245.0 234 53.0
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.8e-62 243.0 247 49.0
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 8.0e-62 241.5 228 55.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 8.0e-62 241.5 228 55.3
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.0e-61 241.1 263 48.3
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-61 240.7 254 48.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 3.0e-61 239.6 242 51.7
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 5.7e-60 235.3 255 49.0
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 7.5e-60 235.0 235 47.2
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 9.8e-60 234.6 232 50.4
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 2.8e-59 233.0 265 44.5
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.4e-58 229.9 228 53.5
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 4.1e-58 229.2 241 52.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 5.4e-58 228.8 238 47.5
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.0e-57 226.9 190 60.5
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.0e-57 226.9 190 60.5
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.5e-57 225.7 238 46.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.8e-56 222.6 211 53.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.2e-54 217.6 226 50.0
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 8.9e-53 211.5 217 50.7
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 3.4e-52 209.5 239 47.7
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.1e-50 204.5 211 52.1
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-49 201.1 235 46.0
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.5e-47 193.4 251 42.2
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 8.0e-46 188.3 264 42.4
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.3e-45 186.8 193 49.7
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.9e-42 177.2 146 63.0
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 1.9e-39 167.2 170 52.9
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 3.6e-38 162.9 239 39.7
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.3e-35 154.5 243 37.9
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.7e-32 144.1 166 48.2
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.1e-29 134.8 101 62.4
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.8e-29 134.0 86 69.8
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.4e-28 129.8 121 55.4
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 2.4e-26 123.6 131 51.1
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.2e-25 121.3 100 58.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.2e-25 121.3 95 64.2
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.6e-25 120.9 138 47.1
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 6.6e-24 115.5 190 37.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.1e-18 98.2 86 55.8
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 7.1e-18 95.5 149 36.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.3e-16 91.3 249 28.5
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.1e-15 88.2 125 36.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.5e-09 66.6 52 63.5
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 4.8e-06 56.2 44 61.4


User provided reference genes

Program Settings