Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.7e-171 605.9 308 100.0
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.5e-45 185.7 268 42.2
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.2e-44 184.5 268 41.8
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 8.0e-44 181.8 258 43.0
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.0e-43 181.4 257 43.2
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.3e-43 180.3 256 43.0
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 3.0e-43 179.9 308 39.6
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.6e-42 176.8 259 42.1
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.6e-42 176.8 258 40.7
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.3e-41 174.5 259 42.5
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.7e-41 172.9 259 41.3
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 6.3e-41 172.2 323 38.1
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 9.1e-40 168.3 288 39.2
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 9.1e-40 168.3 297 40.1
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 9.1e-40 168.3 259 43.2
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.0e-39 167.2 300 37.7
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 2.7e-39 166.8 310 40.3
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.8e-38 162.9 320 39.4
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 3.8e-38 162.9 295 37.3
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 5.0e-38 162.5 308 36.7
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 5.0e-38 162.5 327 34.9
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 8.6e-38 161.8 315 40.3
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.1e-37 161.4 310 37.4
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 1.5e-37 161.0 276 38.4
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.3e-37 159.8 315 40.3
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 4.2e-37 159.5 318 37.7
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 5.5e-37 159.1 291 37.5
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 7.2e-37 158.7 302 37.1
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.1e-36 157.1 287 37.6
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 2.1e-36 157.1 310 36.8
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 2.8e-36 156.8 292 37.3
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 8.0e-36 155.2 257 39.3
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 8.0e-36 155.2 266 42.1
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.0e-35 154.8 277 35.7
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 1.4e-35 154.5 258 40.7
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 4.0e-35 152.9 313 38.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 4.0e-35 152.9 233 42.5
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 5.2e-35 152.5 271 39.1
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.2e-34 151.4 255 40.0
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.0e-34 150.6 224 42.9
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.0e-34 150.6 277 35.4
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 2.6e-34 150.2 312 38.5
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 2.6e-34 150.2 231 41.1
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 2.6e-34 150.2 271 38.7
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 3.4e-34 149.8 272 37.5
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 4.4e-34 149.4 310 33.9
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 4.4e-34 149.4 270 40.0
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 4.4e-34 149.4 316 34.5
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 5.7e-34 149.1 280 37.9
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 5.7e-34 149.1 310 37.7
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 7.5e-34 148.7 285 37.5
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 7.5e-34 148.7 246 39.4
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 7.5e-34 148.7 274 39.1
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.3e-33 147.9 318 36.5
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 2.8e-33 146.7 323 35.3
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 4.9e-33 146.0 231 40.7
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 4.9e-33 146.0 277 36.8
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 8.3e-33 145.2 319 33.5
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 1.8e-32 144.1 306 35.0
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 2.4e-32 143.7 320 36.9
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 3.1e-32 143.3 254 40.6
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 7.0e-32 142.1 273 38.5
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 9.2e-32 141.7 309 37.9
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.2e-31 141.4 266 37.2
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 2.7e-31 140.2 278 37.8
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.7e-31 140.2 266 37.2
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 2.7e-31 140.2 261 37.2
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 3.5e-31 139.8 314 34.4
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.5e-31 139.8 246 38.2
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.5e-31 139.8 246 38.2
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.5e-31 139.8 285 35.8
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 4.5e-31 139.4 254 38.2
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 5.9e-31 139.0 322 33.9
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 7.8e-31 138.7 301 34.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 7.8e-31 138.7 266 36.8
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 7.8e-31 138.7 257 38.9
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 1.0e-30 138.3 247 37.7
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 1.3e-30 137.9 309 35.9
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.3e-30 137.1 233 38.2
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 2.3e-30 137.1 259 37.8
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.9e-30 136.7 301 35.9
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.0e-30 136.0 262 37.4
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 5.0e-30 136.0 292 34.9
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 5.0e-30 136.0 259 37.1
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.6e-30 135.6 234 39.7
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.6e-30 135.6 306 35.6
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 8.6e-30 135.2 310 34.5
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 8.6e-30 135.2 322 32.9
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.5e-29 134.4 304 35.2
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.5e-29 134.4 306 34.0
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 1.9e-29 134.0 306 35.0
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.9e-29 134.0 260 37.3
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.3e-29 133.3 283 36.4
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 3.3e-29 133.3 287 35.9
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 4.3e-29 132.9 297 35.4
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 4.3e-29 132.9 297 35.4
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 5.6e-29 132.5 257 37.0
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 7.3e-29 132.1 263 36.5
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 9.5e-29 131.7 285 35.1
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 9.5e-29 131.7 303 34.7
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.6e-28 131.0 231 38.5
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 2.1e-28 130.6 306 34.6
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 2.8e-28 130.2 258 36.4
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.0e-28 128.6 253 39.1
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 8.0e-28 128.6 253 37.9
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.0e-27 128.3 257 37.0
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 2.3e-27 127.1 264 36.4
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 3.1e-27 126.7 241 36.9
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 4.0e-27 126.3 286 36.7
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 4.0e-27 126.3 309 33.0
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 4.0e-27 126.3 255 37.3
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 2.6e-26 123.6 264 35.6
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 7.5e-26 122.1 267 35.2
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 1.3e-25 121.3 303 34.3
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 2.2e-25 120.6 267 34.8
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 2.2e-25 120.6 239 35.1
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 6.4e-25 119.0 240 36.7
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.9e-24 117.5 281 34.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.9e-24 117.5 282 33.0
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.4e-24 117.1 280 35.4
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 3.2e-24 116.7 250 36.4
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 5.4e-24 115.9 331 32.6
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 9.2e-24 115.2 223 37.2
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 1.2e-23 114.8 263 33.1
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 2.7e-23 113.6 198 38.9
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 4.6e-23 112.8 232 33.6
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.0e-22 111.7 253 36.8
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 1.0e-22 111.7 259 34.0
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.0e-22 111.7 266 32.7
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.3e-22 110.5 261 34.9
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 1.1e-21 108.2 324 30.6
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 1.1e-21 108.2 283 32.2
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 3.3e-21 106.7 256 33.2
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 3.3e-21 106.7 239 30.1
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.3e-21 106.7 268 32.8
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 4.3e-21 106.3 290 31.4
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 5.6e-21 105.9 262 34.0
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.6e-20 104.4 261 31.4
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.1e-20 104.0 200 38.0
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 3.6e-20 103.2 302 29.5
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 3.6e-20 103.2 239 29.7
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 8.0e-20 102.1 261 32.6
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.0e-20 102.1 291 31.3
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 8.0e-20 102.1 207 35.7
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 8.0e-20 102.1 236 35.2
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.8e-19 100.9 241 33.6
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.1e-19 100.1 208 38.0
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 5.2e-19 99.4 256 34.8
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.2e-18 98.2 116 48.3
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 2.0e-18 97.4 206 34.5
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 2.6e-18 97.1 296 31.8
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 4.4e-18 96.3 280 33.6
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 9.8e-18 95.1 263 29.7
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.9e-17 93.6 90 54.4
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-16 91.3 207 33.3
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.9e-16 90.9 203 36.5
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 3.2e-16 90.1 277 32.1
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 5.4e-16 89.4 214 30.8
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 2.7e-15 87.0 95 49.5
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 3.5e-15 86.7 98 52.0
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 3.5e-15 86.7 294 29.3
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 5.6e-13 79.3 334 26.9
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 1.2e-12 78.2 146 34.9
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 1.6e-12 77.8 282 29.8
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.1e-11 75.1 100 43.0
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.1e-11 73.6 131 38.9
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 3.1e-11 73.6 153 32.7
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 1.5e-10 71.2 188 32.4
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.6e-10 70.5 106 40.6
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 2.6e-10 70.5 224 28.6
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 3.7e-09 66.6 89 42.7
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.1e-08 65.1 58 56.9
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 4.1e-08 63.2 75 49.3
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 3.5e-07 60.1 54 53.7
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 4.6e-07 59.7 47 59.6
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 1.0e-06 58.5 142 31.0
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 1.3e-06 58.2 108 38.0
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 5.1e-06 56.2 123 35.8
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 6.6e-06 55.8 300 24.3


User provided reference genes

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