Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.8e-171 605.9 315 100.0
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 5.4e-96 355.1 287 67.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.0e-78 297.7 263 61.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.3e-78 297.4 266 61.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.0e-78 296.2 284 59.5
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 7.3e-77 291.6 282 59.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.2e-76 290.8 284 57.7
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 6.2e-76 288.5 285 60.4
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-74 283.9 284 58.8
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-74 282.7 282 57.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.4e-74 282.3 284 58.1
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.4e-74 282.3 284 58.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 9.9e-74 281.2 306 53.9
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.3e-73 280.8 285 58.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.3e-73 280.8 282 57.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 7.1e-72 275.0 280 57.1
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 3.5e-71 272.7 286 58.0
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.8e-71 271.6 286 57.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.3e-70 270.0 287 55.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.9e-70 269.2 286 57.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.5e-69 267.3 293 53.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.1e-68 263.5 285 54.7
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-67 261.2 286 57.0
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.4e-67 260.8 286 55.2
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.0e-66 256.9 291 53.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 7.6e-66 255.0 293 51.5
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.7e-65 253.8 267 57.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 3.2e-64 249.6 292 55.1
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.2e-64 249.6 285 51.9
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.6e-63 245.7 273 56.4
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 7.9e-63 245.0 291 51.9
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-62 244.2 285 52.6
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.3e-62 243.4 282 54.3
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.8e-60 236.5 264 53.8
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 4.8e-60 235.7 282 51.4
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-59 234.6 296 53.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 3.1e-59 233.0 280 51.8
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.2e-58 231.1 282 50.7
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-58 230.3 278 52.2
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 7.6e-58 228.4 285 50.5
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 9.9e-58 228.0 288 52.1
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.3e-57 227.6 285 50.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-56 224.2 261 54.0
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 6.7e-54 215.3 284 48.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 8.7e-54 214.9 284 49.6
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.3e-52 211.1 272 52.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 5.3e-51 205.7 281 48.0
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.3e-51 205.7 284 47.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 6.9e-51 205.3 249 51.4
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.7e-49 200.7 281 46.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-48 197.6 269 51.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.7e-47 193.4 287 44.6
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.8e-46 190.7 254 47.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 8.7e-46 188.3 286 44.8
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.3e-45 186.0 265 47.2
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 9.7e-45 184.9 286 44.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.4e-43 181.0 265 47.9
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.3e-43 179.1 295 44.7
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.4e-40 171.0 300 42.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.4e-40 168.3 210 51.9
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.1e-39 167.2 275 44.7
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 4.6e-39 166.0 134 66.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 4.6e-39 166.0 282 42.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.3e-38 163.7 254 45.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 3.9e-38 162.9 275 44.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 6.7e-38 162.2 131 67.2
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.7e-38 162.2 131 67.2
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.7e-38 162.2 131 67.2
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.5e-37 160.2 131 66.4
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.3e-37 159.8 286 41.6
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-36 157.9 131 64.9
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.3e-36 157.9 289 41.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-36 157.1 213 48.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.2e-36 155.2 276 40.2
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.1e-35 154.8 266 42.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.8e-35 154.1 293 40.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.1e-35 153.3 289 40.8
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.1e-35 152.9 289 40.1
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.2e-34 151.4 273 42.1
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.5e-34 151.0 305 38.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.5e-34 149.4 294 40.1
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 6.5e-33 145.6 289 39.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.5e-32 143.7 196 50.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.7e-31 140.2 265 38.9
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.8e-30 137.5 273 39.6
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.5e-29 134.4 239 42.3
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 3.3e-29 133.3 244 41.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.3e-29 133.3 258 39.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.1e-27 126.7 109 63.3
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.1e-27 126.3 284 39.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.4e-26 123.2 274 38.0
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 7.7e-26 122.1 278 38.8
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 6.5e-25 119.0 280 37.5
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 6.5e-25 119.0 263 36.9
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.1e-24 118.2 262 38.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-24 118.2 276 39.1
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.1e-24 118.2 275 34.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.4e-24 117.9 214 41.1
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 4.2e-24 116.3 285 34.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.6e-23 114.4 243 37.9
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.6e-23 114.4 192 44.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.6e-23 114.4 276 37.7
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.6e-23 113.2 261 36.4
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 4.7e-23 112.8 210 40.5
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 8.0e-23 112.1 250 35.2
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.0e-22 111.7 230 37.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 3.9e-22 109.8 263 37.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 6.7e-22 109.0 271 35.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.8e-22 108.6 245 36.3
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.4e-21 106.3 261 34.5
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 4.4e-21 106.3 219 39.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.7e-21 105.9 271 35.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.7e-21 105.9 258 37.2
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 7.4e-21 105.5 272 34.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 9.7e-21 105.1 228 39.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 9.7e-21 105.1 209 39.2
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.8e-20 103.6 267 34.1
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.2e-20 102.1 215 36.3
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 8.2e-20 102.1 235 36.2
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 8.2e-20 102.1 241 36.9
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.1e-19 100.1 268 35.1
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.3e-19 99.4 260 36.9
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.0e-19 99.0 260 38.1
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.1e-19 98.6 240 40.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 9.1e-19 98.6 279 32.6
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.2e-18 98.2 78 67.9
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.5e-18 96.7 264 34.8
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.9e-18 95.9 278 33.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.3e-17 94.7 285 32.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.9e-17 93.6 281 31.7
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 5.0e-17 92.8 271 32.8
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.0e-17 92.8 248 34.7
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 6.5e-17 92.4 77 67.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 8.5e-17 92.0 125 50.4
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.5e-17 92.0 104 51.9
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.5e-17 92.0 135 43.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.1e-16 91.7 232 35.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.2e-16 90.1 74 70.3
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 5.5e-16 89.4 136 44.9
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 7.2e-16 89.0 71 70.4
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 9.4e-16 88.6 74 68.9
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 8.0e-15 85.5 255 31.0
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-14 84.7 176 39.8
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.4e-14 84.7 74 66.2
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.4e-14 84.7 273 32.6
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.0e-14 83.6 188 36.2
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.0e-14 83.6 225 35.1
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 4.0e-14 83.2 103 52.4
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.4e-13 79.7 262 32.8
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-12 78.2 246 31.3
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-12 78.2 270 30.4
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.8e-11 74.3 64 60.9
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.4e-11 73.9 198 36.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.1e-11 73.6 120 42.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 3.1e-11 73.6 325 29.5
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 7.0e-11 72.4 91 45.1
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 9.1e-11 72.0 68 55.9
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.2e-10 71.6 262 29.8
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.0e-10 70.9 228 31.1
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 3.5e-10 70.1 115 43.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 5.9e-10 69.3 269 30.1
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 7.7e-10 68.9 249 27.3
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.7e-09 67.8 65 58.5
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.2e-09 67.4 247 30.4
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 6.5e-09 65.9 67 53.7
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 6.5e-09 65.9 186 32.8
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.5e-09 65.9 88 46.6
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 8.5e-09 65.5 255 29.0
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.1e-08 65.1 89 48.3
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.5e-08 63.9 240 27.9
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.5e-08 62.8 77 50.6
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.2e-07 61.6 150 31.3
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 8.0e-07 58.9 128 39.1
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 8.0e-07 58.9 234 29.5
SEGI_41193 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.0e-06 56.6 86 44.2
ATR0174G047 Amborella trichopoda HOM05D003937 ORTHO05D004583 5.2e-06 56.2 87 46.0


User provided reference genes

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