Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 8.0e-205 716.8 356 100.0
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 2.2e-170 602.4 355 83.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.1e-164 583.6 353 81.6
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 5.8e-163 577.8 351 81.8
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 9.9e-163 577.0 349 81.7
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 9.9e-163 577.0 355 81.4
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 4.9e-162 574.7 352 80.4
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 6.4e-162 574.3 351 80.3
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.1e-161 573.5 352 79.8
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.3e-159 566.6 351 79.8
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 1.7e-159 566.2 351 78.9
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 3.0e-159 565.5 347 81.6
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 3.9e-159 565.1 347 81.6
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.9e-158 562.8 351 78.3
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 3.3e-158 562.0 356 78.4
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 1.6e-157 559.7 352 78.7
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.8e-156 556.2 363 77.4
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 3.1e-156 555.4 350 78.3
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 5.2e-156 554.7 352 77.3
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 1.2e-155 553.5 349 77.9
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.5e-155 553.1 348 79.9
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 5.8e-155 551.2 355 78.0
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 2.2e-154 549.3 350 77.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.9e-153 546.2 352 76.4
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 7.1e-153 544.3 394 71.3
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 2.7e-152 542.3 350 78.3
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 6.0e-152 541.2 348 75.9
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 7.8e-152 540.8 354 75.4
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.7e-151 539.7 306 86.3
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.7e-151 539.7 352 75.9
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 2.3e-151 539.3 356 75.8
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.0e-151 538.9 352 75.6
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 6.6e-151 537.7 353 74.8
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 6.6e-151 537.7 352 74.4
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.1e-150 537.0 361 74.2
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.5e-150 536.6 361 74.2
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.5e-150 536.6 352 77.6
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 2.5e-150 535.8 398 70.4
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.3e-149 533.5 353 75.1
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.6e-149 533.1 353 74.8
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.6e-149 533.1 349 76.2
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.1e-149 532.7 308 84.1
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.1e-149 532.7 376 71.3
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 3.6e-149 531.9 305 85.2
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 4.8e-149 531.6 353 75.9
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 1.8e-148 529.6 356 74.4
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 2.4e-148 529.3 354 73.4
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.4e-148 529.3 305 84.6
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.1e-148 528.9 350 74.9
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 3.1e-148 528.9 356 74.2
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 5.3e-148 528.1 349 74.5
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 6.9e-148 527.7 353 74.5
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 6.9e-148 527.7 317 80.1
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 9.0e-148 527.3 361 73.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 9.0e-148 527.3 356 74.2
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.5e-147 526.6 323 78.6
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 2.6e-147 525.8 354 74.0
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 2.2e-146 522.7 305 84.6
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.2e-146 522.7 353 73.4
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 3.8e-146 521.9 356 72.5
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 4.9e-146 521.5 323 78.3
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 4.9e-146 521.5 323 78.3
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 4.9e-146 521.5 351 74.4
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-145 520.0 352 73.9
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.9e-145 519.6 349 73.4
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 4.2e-145 518.5 351 73.5
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 4.2e-145 518.5 355 73.5
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 4.6e-144 515.0 314 81.8
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 1.0e-143 513.8 306 81.7
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 1.3e-143 513.5 308 80.5
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.7e-143 513.1 327 76.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 5.1e-143 511.5 306 82.0
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.5e-142 510.0 314 78.3
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 4.8e-141 505.0 389 67.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 4.5e-139 498.4 328 75.6
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 6.0e-136 488.0 352 69.6
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 8.7e-135 484.2 385 65.5
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.9e-134 483.0 325 75.1
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 3.3e-134 482.3 360 69.2
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 6.2e-133 478.0 306 74.5
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 3.2e-129 465.7 316 72.2
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 3.0e-127 459.1 286 76.6
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 3.9e-127 458.8 349 67.0
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 8.2e-125 451.1 347 66.9
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.9e-122 442.6 300 73.7
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.4e-121 440.3 325 64.9
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.4e-121 440.3 325 64.9
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 2.7e-120 436.0 319 69.6
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 3.5e-120 435.6 316 66.5
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 8.7e-119 431.0 305 68.2
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 5.5e-113 411.8 275 72.7
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 7.2e-113 411.4 373 60.6
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 7.4e-110 401.4 272 75.0
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.3e-109 400.6 307 65.5
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 4.4e-102 375.6 254 74.4
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 5.7e-94 348.6 318 53.5
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.1e-89 334.3 308 51.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.0e-87 327.8 184 85.3
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.4e-86 322.8 240 69.2
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 2.8e-85 319.7 266 59.4
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.5e-81 307.4 377 49.1
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 4.2e-81 305.8 229 69.0
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 3.0e-79 299.7 310 47.7
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 7.0e-76 288.5 241 57.7
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 8.0e-72 275.0 210 65.2
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.2e-67 261.2 247 59.1
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.7e-58 230.7 124 84.7
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.7e-58 230.7 124 84.7
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 8.9e-55 218.4 122 79.5
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 2.6e-54 216.9 122 78.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 2.7e-51 206.8 182 62.6
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-50 203.8 137 74.5
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 7.3e-41 172.2 103 74.8
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 3.2e-36 156.8 147 57.8
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.7e-35 153.7 307 31.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 8.7e-34 148.7 120 65.0
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 4.3e-33 146.4 80 86.2
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 5.6e-33 146.0 300 35.3
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.6e-32 144.4 102 69.6
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 4.9e-29 132.9 117 60.7
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 6.0e-27 125.9 178 42.1
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.5e-25 121.3 102 61.8
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.6e-24 117.9 183 42.1
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 3.1e-23 113.6 131 51.1
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 2.6e-22 110.5 66 72.7
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 4.6e-19 99.8 178 38.8
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.6e-16 91.3 133 41.4
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.8e-13 80.1 64 62.5
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.2e-11 75.1 47 74.5
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.6e-08 64.7 59 61.0


User provided reference genes

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