Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 9.1e-196 686.8 367 100.0
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.1e-151 540.4 364 80.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.8e-149 531.9 365 78.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.8e-149 531.9 364 80.2
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 8.4e-149 530.8 365 79.7
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.8e-143 513.1 371 73.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.4e-143 512.7 367 76.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 4.0e-143 511.9 363 75.2
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 6.9e-143 511.1 363 77.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.6e-142 509.2 363 76.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 5.8e-142 508.1 367 75.7
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.4e-140 502.7 366 74.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.6e-139 500.0 349 78.2
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.1e-139 499.6 366 75.1
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.7e-139 499.2 368 75.8
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.0e-139 498.0 349 77.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 7.8e-139 497.7 349 77.9
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.0e-138 497.3 371 75.5
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.7e-138 496.5 368 75.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.3e-138 496.1 357 75.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.9e-138 495.4 366 74.6
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 6.6e-138 494.6 370 75.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 8.7e-138 494.2 366 73.8
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.1e-137 493.8 371 73.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-137 493.8 364 76.1
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.9e-137 493.0 368 75.8
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 2.5e-137 492.7 367 74.4
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 7.3e-137 491.1 365 74.2
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 7.3e-137 491.1 365 74.2
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 7.3e-137 491.1 368 73.9
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.3e-136 490.3 367 73.8
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.3e-136 490.3 335 79.7
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.1e-136 489.6 365 72.9
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-136 489.6 370 74.6
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.1e-136 489.6 326 80.4
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-136 488.8 365 74.0
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-136 488.8 365 74.2
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.8e-136 488.4 367 73.0
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 6.2e-136 488.0 344 77.3
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-136 487.6 365 73.7
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 8.1e-136 487.6 365 73.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 8.1e-136 487.6 365 74.0
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.4e-135 486.9 365 73.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.1e-135 485.7 365 73.4
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 4.0e-135 485.3 337 76.6
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 4.0e-135 485.3 369 73.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 6.9e-135 484.6 367 73.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 6.9e-135 484.6 365 73.7
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 9.0e-135 484.2 365 73.2
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.2e-134 483.8 325 78.2
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.5e-134 483.4 365 73.2
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.0e-134 483.0 334 78.7
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 2.6e-134 482.6 354 74.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 3.4e-134 482.3 365 73.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 3.4e-134 482.3 325 79.7
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 5.8e-134 481.5 366 73.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.2e-133 479.6 348 76.1
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 2.2e-133 479.6 365 73.2
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 2.2e-133 479.6 365 73.2
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 2.2e-133 479.6 333 77.2
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.8e-133 478.8 365 73.2
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 6.4e-133 478.0 371 73.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 6.4e-133 478.0 338 77.5
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 8.4e-133 477.6 338 73.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.9e-132 476.5 383 68.9
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 9.3e-132 474.2 363 74.1
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-131 473.8 323 79.3
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.7e-131 472.6 361 71.5
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.8e-130 469.9 333 76.9
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.8e-130 469.9 365 71.0
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.3e-130 469.5 372 71.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.3e-130 469.5 377 72.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.9e-130 468.8 323 76.5
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 5.1e-130 468.4 377 71.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 5.1e-130 468.4 375 72.3
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.7e-130 468.0 372 70.7
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 8.7e-130 467.6 373 71.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 5.6e-129 464.9 339 74.9
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 7.4e-129 464.5 321 77.9
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.6e-129 464.2 361 70.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.1e-128 463.0 343 73.8
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.7e-128 462.2 379 68.9
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 3.7e-128 462.2 328 77.1
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 4.8e-128 461.8 379 69.4
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.8e-128 461.8 323 75.9
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.4e-127 460.3 330 77.3
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.8e-127 459.9 363 71.1
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 4.0e-127 458.8 364 70.3
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.5e-126 456.8 371 70.6
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 4.5e-126 455.3 362 69.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 7.6e-126 454.5 329 74.5
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 7.6e-126 454.5 330 73.3
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.7e-125 453.4 371 66.8
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.2e-125 453.0 368 67.4
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.4e-125 451.4 362 69.1
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 6.4e-125 451.4 344 72.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.1e-124 450.7 368 70.7
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 5.5e-124 448.4 334 75.4
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 7.1e-124 448.0 371 67.7
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 9.3e-124 447.6 346 71.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-123 447.2 346 72.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.6e-123 446.8 346 71.1
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.6e-123 446.8 356 70.2
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 2.1e-123 446.4 338 66.9
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.7e-123 446.0 368 69.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.6e-123 445.3 343 70.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.9e-123 444.5 369 69.1
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.7e-122 441.4 368 69.6
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 4.3e-121 438.7 358 70.9
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 4.3e-121 438.7 362 69.1
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 9.6e-121 437.6 368 68.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 3.7e-120 435.6 322 74.2
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.2e-116 422.5 353 66.9
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.3e-114 417.2 372 61.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.3e-113 412.5 367 65.7
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.1e-107 393.3 330 66.7
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.7e-107 392.9 324 67.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 8.7e-106 387.9 314 71.7
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 3.3e-105 386.0 293 73.4
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 9.7e-105 384.4 367 63.2
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.1e-97 360.9 335 61.8
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 2.0e-97 360.1 329 62.6
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 6.3e-96 355.1 329 60.8
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 3.2e-92 342.8 203 83.3
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.5e-92 342.0 330 61.2
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.7e-91 339.0 289 69.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 6.1e-91 338.6 243 77.4
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.4e-90 337.4 317 60.3
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.3e-90 336.7 243 77.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 7.7e-86 321.6 344 55.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-84 317.0 297 57.2
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.3e-79 298.9 365 51.5
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.5e-77 292.0 322 55.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.5e-73 280.8 326 55.5
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.1e-67 258.8 240 57.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 5.2e-58 229.2 209 60.8
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-57 227.6 139 75.5
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.5e-52 210.3 208 55.8
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 6.0e-46 189.1 128 75.0
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.6e-43 181.0 165 58.8
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 9.2e-39 165.2 164 58.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 6.8e-34 149.1 100 72.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.4e-31 141.4 95 72.6
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-30 138.3 90 74.4
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 5.2e-26 122.9 95 65.3
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 6.9e-26 122.5 128 53.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 9.9e-25 118.6 78 75.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 6.0e-22 109.4 104 55.8
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 6.0e-22 109.4 282 32.6
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 3.9e-21 106.7 89 62.9
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.3e-20 102.4 118 48.3
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 9.6e-20 102.1 95 56.8
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-18 97.8 65 75.4
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-17 94.4 66 68.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.1e-12 78.6 272 31.2
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 2.5e-12 77.4 59 64.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 3.3e-12 77.0 177 35.6
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 2.1e-11 74.3 139 38.8
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.1e-10 70.5 48 72.9
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.2e-09 68.6 63 60.3
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-09 68.6 53 64.2
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-09 67.8 48 68.8
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.4e-09 67.0 52 59.6
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.2e-08 64.3 75 50.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.9e-08 63.2 48 66.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.9e-08 63.2 75 48.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.9e-08 63.2 75 48.0
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.9e-08 63.2 53 60.4
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.4e-08 62.8 47 61.7
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.5e-07 59.7 67 73.1
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 9.3e-07 58.9 65 49.2
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-06 57.8 48 60.4
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 2.7e-06 57.4 70 45.7


User provided reference genes

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