Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.0e-218 763.1 385 100.0
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 8.2e-147 524.2 416 66.1
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 1.8e-146 523.1 416 66.8
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 1.1e-140 503.8 413 65.6
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 4.8e-139 498.4 413 64.6
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 5.3e-138 495.0 473 58.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 2.0e-137 493.0 415 64.3
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 1.1e-135 487.3 419 63.7
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.0e-133 480.7 394 64.5
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 2.8e-131 472.6 416 61.8
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.4e-130 470.3 391 64.2
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.6e-129 466.8 412 62.6
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 5.0e-128 461.8 416 59.1
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 7.2e-127 458.0 391 63.2
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 8.0e-126 454.5 393 59.3
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.2e-124 450.7 337 68.2
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 1.2e-124 450.7 417 58.3
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 9.8e-124 447.6 337 68.2
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 4.8e-123 445.3 418 60.3
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 6.3e-123 444.9 393 58.5
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 6.3e-123 444.9 419 60.4
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.8e-122 443.4 412 58.5
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 2.4e-122 443.0 416 59.1
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 3.1e-122 442.6 419 59.4
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 4.1e-122 442.2 366 63.7
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 3.5e-121 439.1 416 59.1
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 2.9e-120 436.0 416 57.5
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 2.9e-120 436.0 416 57.7
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 8.6e-120 434.5 362 61.6
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 3.2e-119 432.6 420 59.8
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.1e-118 429.9 419 58.2
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 4.7e-118 428.7 429 56.4
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 8.0e-118 427.9 415 58.6
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 5.2e-117 425.2 427 57.8
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.4e-116 422.5 419 57.3
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.8e-115 419.5 419 56.6
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 3.7e-115 419.1 416 56.7
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 4.9e-115 418.7 419 57.3
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.4e-114 417.2 420 57.1
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 2.4e-114 416.4 414 56.3
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 3.1e-114 416.0 409 55.7
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 5.9e-113 411.8 410 55.1
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.0e-112 411.0 364 62.1
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 5.0e-112 408.7 427 56.7
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.3e-111 406.0 384 58.1
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 9.5e-111 404.4 422 56.6
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.1e-110 403.3 444 52.5
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 3.0e-109 399.4 410 54.1
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.8e-109 398.3 413 52.5
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.8e-109 398.3 407 56.8
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 2.6e-108 396.4 413 53.3
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.6e-108 396.4 347 59.9
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 2.6e-108 396.4 419 55.8
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 4.4e-108 395.6 388 56.7
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 7.5e-108 394.8 409 54.8
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 9.8e-108 394.4 314 61.1
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.7e-107 392.5 363 58.1
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 8.3e-107 391.3 430 53.0
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.4e-106 390.6 388 55.7
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.6e-105 387.1 410 53.4
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 2.7e-105 386.3 414 53.4
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.0e-104 384.4 464 50.4
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 3.0e-104 382.9 410 51.7
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 3.9e-104 382.5 443 50.6
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 8.6e-104 381.3 413 52.8
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.5e-103 380.6 340 59.4
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 3.3e-103 379.4 414 52.9
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 1.2e-102 377.5 412 52.4
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 2.8e-102 376.3 343 58.3
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.1e-101 374.4 424 55.0
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.4e-101 374.0 415 51.3
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 2.3e-101 373.2 414 51.2
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 5.2e-101 372.1 414 51.2
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 5.2e-101 372.1 415 51.3
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 5.2e-101 372.1 405 52.8
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 6.8e-101 371.7 414 51.0
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 2.0e-100 370.2 415 51.3
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 2.2e-99 366.7 410 50.7
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 1.9e-98 363.6 370 57.3
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 4.6e-97 359.0 338 58.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 8.6e-96 354.8 376 52.1
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 3.3e-95 352.8 407 50.6
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 4.7e-94 349.0 425 50.6
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.1e-93 347.8 244 68.4
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 6.8e-93 345.1 420 47.9
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 3.4e-92 342.8 427 49.6
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 2.4e-90 336.7 240 69.6
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 7.3e-87 325.1 419 49.4
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.4e-85 320.1 412 48.3
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 5.4e-82 308.9 422 46.2
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.6e-78 297.4 340 52.9
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.2e-75 287.0 411 45.5
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.4e-74 284.3 413 43.3
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.9e-74 283.9 191 72.8
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.5e-71 274.2 336 47.3
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 1.6e-70 270.8 420 45.5
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 6.7e-64 248.8 288 47.9
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 5.8e-60 235.7 318 41.2
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.2e-58 229.9 200 59.0
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 2.1e-49 200.7 303 38.9
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-48 198.0 167 59.3
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.3e-47 193.4 370 33.2
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 3.7e-46 189.9 381 33.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 1.8e-40 171.0 111 71.2
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-39 167.2 111 69.4
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-38 164.9 146 57.5
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.1e-37 160.2 129 59.7
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.1e-33 147.5 197 46.2
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 6.1e-33 146.0 120 63.3
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 4.4e-31 139.8 174 51.1
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 2.8e-30 137.1 190 42.1
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.9e-26 124.4 129 50.4
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.2e-25 121.7 210 40.5
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 3.9e-24 116.7 165 38.2
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 9.7e-23 112.1 147 46.9
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.1e-21 108.6 128 50.0
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.0e-19 99.8 77 55.8
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.2e-18 97.1 146 41.8
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 7.2e-18 95.9 81 58.0
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.1e-17 94.4 69 59.4
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.8e-16 91.3 61 63.9
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 2.4e-13 80.9 97 48.5
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 7.0e-13 79.3 92 47.8
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 9.1e-13 79.0 252 28.2
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 5.2e-08 63.2 293 24.2
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 1.7e-06 58.2 54 51.9


User provided reference genes

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