Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028566m.g Citrus clementina HOM05D005392 ORTHO05D006709 2.4e-234 815.1 405 100.0
GSVIVG01036185001 Vitis vinifera HOM05D005392 ORTHO05D006709 2.0e-151 539.7 532 55.6
ClCG02G022080 Citrullus lanatus HOM05D005392 ORTHO05D006709 5.8e-151 538.1 494 60.5
QL01p013222 Quercus lobata HOM05D005392 ORTHO05D006709 7.5e-151 537.7 523 57.9
Sabra09G0115300 Salix brachista HOM05D005392 ORTHO05D006709 6.8e-144 514.6 542 56.3
Sabra09G0112900 Salix brachista HOM05D005392 ORTHO05D006709 7.6e-143 511.1 562 54.6
Atru.chr3.3331 Acer truncatum HOM05D005392 ORTHO05D006709 5.4e-141 505.0 410 68.0
SalBow6G4405 Salvia bowleyana HOM05D005392 ORTHO05D006709 1.2e-140 503.8 472 59.3
vmacro03297 Vaccinium macrocarpon HOM05D005392 ORTHO05D006709 6.0e-140 501.5 495 56.6
COL.COLO4_19934 Corchorus olitorius HOM05D005392 ORTHO05D006709 7.3e-138 494.6 475 58.3
EL10Ac7g15794 Beta vulgaris HOM05D005392 ORTHO05D006709 3.1e-136 489.2 490 55.7
Cpa.g.sc32.122 Carica papaya HOM05D005392 ORTHO05D006709 4.4e-135 485.3 486 57.2
ECA238G1310 Erigeron canadensis HOM05D000477 ORTHO05D000338 1.1e-133 480.7 461 57.0
AUR62009791 Chenopodium quinoa HOM05D005392 ORTHO05D006709 1.7e-131 473.4 487 55.6
Manes.11G159800 Manihot esculenta HOM05D005392 ORTHO05D006709 3.9e-131 472.2 405 64.7
Haze_23423 Corylus avellana HOM05D005392 ORTHO05D006709 1.8e-128 463.4 590 47.6
Hma1.2p1_0305F.1_g119470 Hydrangea macrophylla HOM05D005392 ORTHO05D006709 9.0e-128 461.1 412 62.9
MELO3C021433.2 Cucumis melo HOM05D005392 ORTHO05D006709 4.5e-127 458.8 407 63.9
FAN21G0773 Fragaria x ananassa HOM05D005392 ORTHO05D006709 3.8e-126 455.7 484 56.0
TWI75G0596 Tripterygium wilfordii HOM05D005392 ORTHO05D006709 3.8e-126 455.7 408 62.0
CiPaw.13G138700 Carya illinoinensis HOM05D005392 ORTHO05D006709 8.4e-126 454.5 410 63.2
Prupe.6G124700 Prunus persica HOM05D005392 ORTHO05D006709 8.4e-126 454.5 406 62.1
Potri.009G146000 Populus trichocarpa HOM05D005392 ORTHO05D006709 1.1e-125 454.1 421 61.0
TAR369G0360 Trochodendron aralioides HOM05D005392 ORTHO05D006709 1.1e-125 454.1 410 61.7
CANSAT11G1964 Cannabis sativa HOM05D005392 ORTHO05D006709 4.2e-125 452.2 388 64.4
Dinv29445 Davidia involucrata HOM05D005392 ORTHO05D006709 9.3e-125 451.1 410 62.4
RcHm_v2.0_Chr5g0054911 Rosa chinensis HOM05D005392 ORTHO05D006709 1.6e-124 450.3 412 62.6
CSS0010610 Camellia sinensis var. sinensis HOM05D005392 ORTHO05D006709 2.1e-124 449.9 412 60.2
Oeu050205.1 Olea europaea HOM05D005392 ORTHO05D006709 3.5e-124 449.1 405 60.5
CSS0035304 Camellia sinensis var. sinensis HOM05D005392 ORTHO05D006709 4.6e-124 448.7 412 60.0
Sed0020109 Sechium edule HOM05D005392 ORTHO05D006709 2.3e-123 446.4 405 62.5
MD11G1162100 Malus domestica HOM05D005392 ORTHO05D006709 3.0e-123 446.0 404 62.1
PGR119G0315 Punica granatum HOM05D005392 ORTHO05D006709 1.5e-122 443.7 412 60.0
Gohir.A05G082400 Gossypium hirsutum HOM05D005392 ORTHO05D006709 2.5e-122 443.0 400 62.0
Glyma.13G318000 Glycine max HOM05D005392 ORTHO05D006709 3.3e-122 442.6 379 64.6
arahy.Tifrunner.gnm1.ann1.J9251A Arachis hypogaea HOM05D005392 ORTHO05D006709 4.3e-122 442.2 378 63.8
FvH4_3g29620 Fragaria vesca HOM05D005392 ORTHO05D006709 4.3e-122 442.2 406 62.1
Glyma.12G183100 Glycine max HOM05D005392 ORTHO05D006709 4.3e-122 442.2 379 64.9
Thecc.09G287600 Theobroma cacao HOM05D005392 ORTHO05D006709 4.3e-122 442.2 401 61.8
Actinidia07231 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.3e-121 440.7 440 57.3
CARHR120330 Cardamine hirsuta HOM05D005392 ORTHO05D006709 2.8e-121 439.5 406 59.1
Gorai.009G087100 Gossypium raimondii HOM05D005392 ORTHO05D006709 6.2e-121 438.3 400 62.0
PSO384G3475 Papaver somniferum HOM05D005392 ORTHO05D006709 8.1e-121 438.0 401 61.3
Phvul.005G125766 Phaseolus vulgaris HOM05D005392 ORTHO05D006709 1.8e-120 436.8 401 61.3
Gohir.D05G085300 Gossypium hirsutum HOM05D005392 ORTHO05D006709 2.4e-120 436.4 400 61.8
THA.LOC104826410 Tarenaya hassleriana HOM05D005392 ORTHO05D006709 2.4e-120 436.4 397 61.7
Ca_01667_v3 Cicer arietinum L. HOM05D005392 ORTHO05D006709 3.1e-120 436.0 408 59.6
FAN16G3342 Fragaria x ananassa HOM05D005392 ORTHO05D006709 3.1e-120 436.0 415 61.0
PSO339G4135 Papaver somniferum HOM05D005392 ORTHO05D006709 4.0e-120 435.6 377 63.7
Carub.0004s0839 Capsella rubella HOM05D005392 ORTHO05D006709 6.9e-120 434.9 409 58.7
CsaV3_6G014910 Cucumis sativus L. HOM05D005392 ORTHO05D006709 6.9e-120 434.9 384 61.7
Nn6g34991 Nelumbo nucifera HOM05D005392 ORTHO05D006709 6.9e-120 434.9 405 61.2
AL4G22670 Arabidopsis lyrata HOM05D005392 ORTHO05D006709 5.8e-119 431.8 409 58.9
AT2G27680 Arabidopsis thaliana HOM05D005392 ORTHO05D006709 5.8e-119 431.8 408 58.8
Hund18739 Selenicereus undatus HOM05D005392 ORTHO05D006709 5.8e-119 431.8 399 62.2
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 5.8e-119 431.8 384 62.8
CDE02G1304 Ceratophyllum demersum HOM05D005392 ORTHO05D006709 1.3e-118 430.6 366 63.1
Psat5g256160 Pisum sativum HOM05D005392 ORTHO05D006709 1.3e-118 430.6 406 58.9
Eucgr.J00468 Eucalyptus grandis HOM05D005392 ORTHO05D006709 1.7e-118 430.3 421 59.1
AL4G22650 Arabidopsis lyrata HOM05D005392 ORTHO05D006709 2.2e-118 429.9 408 59.3
HanXRQChr14g0451701 Helianthus annuus HOM05D005392 ORTHO05D006709 3.8e-118 429.1 410 60.7
DCAR_006148 Daucus carota HOM05D005392 ORTHO05D006709 1.2e-116 424.1 495 50.9
TPR.G23777 Trifolium pratense HOM05D005392 ORTHO05D006709 1.2e-116 424.1 408 57.8
Aqoxy4G02830 Aquilegia oxysepala HOM05D005392 ORTHO05D006709 4.6e-116 422.2 381 61.4
Thhalv10016780m.g Eutrema salsugineum HOM05D005392 ORTHO05D006709 4.6e-116 422.2 405 58.0
FAN11G2232 Fragaria x ananassa HOM05D005392 ORTHO05D006709 4.6e-116 422.2 401 59.9
BcaC02g10896 Brassica carinata HOM05D005392 ORTHO05D006709 1.0e-115 421.0 404 58.2
C04p23950 Brassica napus HOM05D005392 ORTHO05D006709 1.8e-115 420.2 404 57.9
BcaB02g10107 Brassica carinata HOM05D005392 ORTHO05D006709 2.3e-115 419.9 411 56.7
A07p18330 Brassica napus HOM05D005392 ORTHO05D006709 2.3e-115 419.9 404 57.9
BolC4t23888H Brassica oleracea HOM05D005392 ORTHO05D006709 3.0e-115 419.5 404 57.9
Lalb_Chr24g0395241 Lupinus albus HOM05D005392 ORTHO05D006709 3.9e-115 419.1 380 59.7
unitig_899.g14958 Utricularia gibba HOM05D005392 ORTHO05D006709 3.9e-115 419.1 385 61.8
BraA07t29549Z Brassica rapa HOM05D005392 ORTHO05D006709 5.1e-115 418.7 404 57.9
Solyc11g067160.2 Solanum lycopersicum HOM05D005392 ORTHO05D006709 6.7e-115 418.3 390 60.5
Sopen11g026840 Solanum pennellii HOM05D005392 ORTHO05D006709 6.7e-115 418.3 390 60.5
Rhsim05G0032600 Rhododendron simsii HOM05D005392 ORTHO05D006709 1.9e-114 416.8 395 59.5
Lj3g0002711 Lotus japonicus HOM05D005392 ORTHO05D006709 4.3e-114 415.6 372 62.4
Sp4g10460 Schrenkiella parvula HOM05D005392 ORTHO05D006709 4.3e-114 415.6 405 57.3
Sc12g0004320 Simmondsia chinensis HOM05D005392 ORTHO05D006709 4.3e-114 415.6 410 58.0
PGSC0003DMG400007408 Solanum tuberosum HOM05D005392 ORTHO05D006709 5.6e-114 415.2 388 60.6
Carub.0004s0841 Capsella rubella HOM05D005392 ORTHO05D006709 1.6e-113 413.7 408 57.6
Medtr2g085125 Medicago truncatula HOM05D005392 ORTHO05D006709 4.8e-113 412.1 376 60.6
CAN.G644.5 Capsicum annuum HOM05D005392 ORTHO05D006709 8.2e-113 411.4 368 60.9
Os09g0567366 Oryza sativa ssp. japonica HOM05D005392 ORTHO05D006709 8.2e-113 411.4 367 61.0
Aa31LG5G8280 Aethionema arabicum HOM05D005392 ORTHO05D006709 1.4e-112 410.6 416 55.5
CDE04G0325 Ceratophyllum demersum HOM05D005392 ORTHO05D006709 1.2e-111 407.5 394 59.1
SGA_v2.0_scaffold147G36361 Striga asiatica HOM05D005392 ORTHO05D006709 1.2e-111 407.5 405 58.8
ATR0820G262 Amborella trichopoda HOM05D005392 ORTHO05D006709 2.6e-111 406.4 368 61.1
HPP92_003276 Vanilla planifolia HOM05D005392 ORTHO05D006709 4.5e-111 405.6 377 60.2
Lalb_Chr14g0374111 Lupinus albus HOM05D005392 ORTHO05D006709 1.3e-110 404.1 397 57.9
Psat5g256000 Pisum sativum HOM05D005392 ORTHO05D006709 8.4e-110 401.4 384 58.3
SEGI_32260 Sequoiadendron giganteum HOM05D005392 ORTHO05D006709 3.2e-109 399.4 372 59.1
Lj2A987T33 Lonicera japonica HOM05D005392 ORTHO05D006709 6.0e-108 395.2 428 55.4
Duzib150G1562 Durio zibethinus HOM05D005392 ORTHO05D006709 7.9e-108 394.8 388 59.8
arahy.Tifrunner.gnm1.ann1.XC3EXN Arachis hypogaea HOM05D005392 ORTHO05D006709 3.7e-105 386.0 344 62.5
RcHm_v2.0_Chr5g0054671 Rosa chinensis HOM05D005392 ORTHO05D006709 6.3e-105 385.2 403 56.6
AUR62039238 Chenopodium quinoa HOM05D005392 ORTHO05D006709 2.0e-103 380.2 339 62.2
Zm00001eb096060 Zea mays HOM05D005392 ORTHO05D006709 5.0e-102 375.6 359 57.7
AagrBONN_evm.TU.Sc2ySwM_362.213 Anthoceros agrestis HOM05D005392 ORTHO05D006709 8.5e-102 374.8 370 55.7
CARHR120340 Cardamine hirsuta HOM05D005392 ORTHO05D006709 1.2e-100 370.9 394 54.3
Ah.08g215920 Amaranthus hybridus HOM05D005392 ORTHO05D006709 2.7e-100 369.8 429 52.7
Lsat_1_v5_gn_2_95901 Lactuca sativa HOM05D005392 ORTHO05D006709 6.1e-100 368.6 428 49.8
Cc01_g09510 Coffea canephora HOM05D005392 ORTHO05D006709 1.8e-99 367.1 327 63.9
CARHR120370 Cardamine hirsuta HOM05D005392 ORTHO05D006709 3.0e-99 366.3 378 55.0
Mapoly0068s0097 Marchantia polymorpha HOM05D005392 ORTHO05D006709 3.9e-99 365.9 388 54.4
Pp3c8_9920 Physcomitrium patens HOM05D005392 ORTHO05D006709 4.3e-98 362.5 411 51.1
Mapoly0074s0037 Marchantia polymorpha HOM05D005392 ORTHO05D006709 1.1e-96 357.8 382 52.1
Dinv05174 Davidia involucrata HOM05D005392 ORTHO05D006709 2.2e-94 350.1 208 84.1
SMO116G0019 Selaginella moellendorffii HOM05D005392 ORTHO05D006709 2.2e-94 350.1 372 51.3
Peaxi162Scf00544g00917 Petunia axillaris HOM05D005392 ORTHO05D006709 1.0e-91 341.3 405 50.4
CBR_g10840 Chara braunii HOM05D005392 ORTHO05D006709 6.1e-84 315.5 362 48.3
Hma1.2p1_0305F.1_g119500 Hydrangea macrophylla HOM05D005392 ORTHO05D006709 2.6e-82 310.1 208 76.9
GSVIVG01034253001 Vitis vinifera HOM05D005392 ORTHO05D006709 2.5e-77 293.5 207 72.0
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 7.2e-69 265.4 325 49.2
MBI17_g16880_MAGBIO Magnolia biondii HOM05D005392 ORTHO05D006709 1.6e-63 247.7 140 85.7
MD03G1139700 Malus domestica HOM05D005392 ORTHO05D006709 2.7e-63 246.9 345 44.6
arahy.Tifrunner.gnm1.ann1.32614Y Arachis hypogaea HOM05D005392 ORTHO05D006709 2.5e-61 240.4 307 47.9
Hund20869 Selenicereus undatus HOM05D005392 ORTHO05D006709 2.0e-55 220.7 132 80.3
CBR_g23540 Chara braunii HOM05D005392 ORTHO05D006709 6.6e-54 215.7 356 40.2
Rhsim05G0023600 Rhododendron simsii HOM05D005392 ORTHO05D006709 5.8e-50 202.6 331 40.2
Thhalv10017835m.g Eutrema salsugineum HOM05D005392 ORTHO05D006709 8.3e-41 172.2 209 49.8
RcHm_v2.0_Chr5g0054781 Rosa chinensis HOM05D005392 ORTHO05D006709 3.2e-40 170.2 100 82.0
Cre16.g684750 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D006709 7.8e-39 165.6 348 32.5
Pp3c10_3150 Physcomitrium patens HOM05D005392 ORTHO05D006709 1.0e-38 165.2 159 54.1
Migut.D02344 Erythranthe guttata HOM05D005392 ORTHO05D006709 1.9e-37 161.0 238 45.0
ATR0820G214 Amborella trichopoda HOM05D005392 ORTHO05D006709 5.2e-35 152.9 100 75.0
Cre12.g518900 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D006709 9.2e-32 142.1 355 32.4
Pp3c3_32330 Physcomitrium patens HOM05D005392 ORTHO05D006709 1.7e-30 137.9 364 29.1
Lj2C987T5 Lonicera japonica HOM05D005392 ORTHO05D006709 4.7e-28 129.8 101 64.4
MCO12G490 Micromonas commoda HOM05D005392 ORTHO05D006709 2.4e-27 127.5 347 30.5
RcHm_v2.0_Chr5g0054681 Rosa chinensis HOM05D005392 ORTHO05D006709 2.6e-26 124.0 98 63.3
PRCOL_00006822 Prasinoderma coloniale HOM05D005392 ORTHO05D006709 8.4e-25 119.0 205 33.2
MBI01_g15449_MAGBIO Magnolia biondii HOM05D005392 ORTHO05D006709 1.4e-24 118.2 121 54.5
Cre02.g095127 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D006709 1.9e-24 117.9 351 28.2
MELO3C014407.2 Cucumis melo HOM05D005392 ORTHO05D006709 4.2e-24 116.7 105 58.1
Medtr2g085135 Medicago truncatula HOM05D005392 ORTHO05D006709 3.5e-23 113.6 107 53.3
FAN25G3482 Fragaria x ananassa HOM05D005392 ORTHO05D006709 1.2e-20 105.1 57 80.7
MELO3C008584.2 Cucumis melo HOM05D005392 ORTHO05D006709 2.1e-20 104.4 105 51.4
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 6.2e-20 102.8 102 53.9
Cre12.g544000 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D145719 3.0e-14 84.0 132 35.6
Prupe.3G179600 Prunus persica HOM05D002607 ORTHO05D006782 6.0e-07 59.7 333 23.1
Medtr3g449790 Medicago truncatula HOM05D002607 ORTHO05D006782 7.9e-07 59.3 386 21.5
MELO3C030474.2 Cucumis melo HOM05D005392 ORTHO05D006709 6.7e-06 56.2 32 75.0


User provided reference genes

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