Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.5e-234 815.1 407 100.0
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 8.8e-208 726.9 407 88.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.7e-190 668.3 407 81.6
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 3.7e-190 668.3 406 80.5
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 4.9e-190 667.9 407 81.1
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.1e-189 666.8 407 81.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.7e-188 662.1 407 81.1
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 4.5e-188 661.4 406 79.6
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 4.5e-188 661.4 407 80.8
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 8.6e-187 657.1 433 77.1
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.9e-186 656.0 407 78.9
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 9.5e-186 653.7 407 79.6
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.0e-184 650.2 407 79.6
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.3e-184 649.0 406 78.6
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.0e-184 648.7 407 78.6
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 4.0e-184 648.3 407 79.6
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 6.8e-184 647.5 407 79.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 9.8e-183 643.7 407 78.1
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.3e-182 643.3 407 79.6
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.7e-182 642.9 369 84.3
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 4.9e-182 641.3 407 78.4
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.9e-181 639.4 407 76.9
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.9e-181 639.4 407 79.1
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.2e-181 638.6 407 78.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 4.6e-180 634.8 406 77.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 7.8e-180 634.0 406 77.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.7e-179 632.9 410 77.3
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 3.9e-179 631.7 415 75.7
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 6.6e-179 630.9 408 77.9
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.9e-178 629.4 406 77.3
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.5e-178 629.0 407 78.1
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.3e-178 628.6 408 77.2
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.1e-177 625.9 406 77.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 4.7e-177 624.8 361 84.8
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.1e-176 623.6 407 76.4
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 3.1e-176 622.1 401 78.1
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 3.1e-176 622.1 401 78.1
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.1e-176 622.1 408 76.2
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 4.0e-176 621.7 412 76.7
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 5.2e-176 621.3 406 77.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.5e-175 619.8 412 74.8
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 7.5e-175 617.5 407 74.7
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 9.8e-175 617.1 401 77.8
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.7e-174 616.3 408 75.2
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.1e-173 613.6 365 83.0
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 3.2e-173 612.1 409 75.3
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 9.2e-173 610.5 407 74.9
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.2e-172 610.1 407 74.0
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.5e-172 608.6 347 83.9
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 7.8e-172 607.4 369 79.1
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.7e-171 606.3 401 75.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 3.0e-171 605.5 407 74.0
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 3.9e-171 605.1 407 73.0
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 5.0e-171 604.7 409 75.3
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 6.6e-171 604.4 406 73.9
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 8.6e-171 604.0 352 81.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.1e-170 603.6 407 73.7
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 5.6e-170 601.3 406 74.4
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 5.6e-170 601.3 408 74.3
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 7.3e-170 600.9 407 74.9
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.6e-169 599.7 375 77.9
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.6e-169 599.7 408 75.0
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.1e-169 599.4 408 73.8
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 3.6e-169 598.6 408 72.5
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.4e-168 596.7 409 75.6
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.3e-168 595.9 426 71.4
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.1e-168 595.5 369 78.3
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 6.8e-168 594.3 408 72.3
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.2e-167 593.6 407 73.0
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-167 593.6 407 73.2
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-167 593.6 407 73.2
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.6e-167 592.4 407 72.5
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 3.4e-167 592.0 408 73.0
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 7.5e-167 590.9 407 72.0
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.9e-166 589.0 408 73.3
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 4.9e-166 588.2 415 71.3
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 6.4e-166 587.8 404 72.0
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 8.3e-166 587.4 407 72.2
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 4.1e-165 585.1 411 72.7
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 7.8e-164 580.9 407 70.3
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.7e-163 579.7 417 71.0
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 2.3e-163 579.3 384 75.5
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 6.6e-163 577.8 445 69.0
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 6.6e-163 577.8 391 74.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.9e-162 576.2 407 72.0
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.5e-162 575.9 376 75.8
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 7.3e-162 574.3 435 67.8
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.2e-161 573.5 408 72.8
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.6e-161 572.0 383 74.4
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-160 568.5 343 79.9
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 6.8e-160 567.8 327 83.5
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.5e-159 566.6 406 71.9
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.7e-158 563.1 408 71.6
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 4.9e-158 561.6 368 75.3
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.4e-158 561.2 439 67.0
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.1e-157 560.5 314 85.4
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.1e-156 556.2 382 72.5
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.5e-154 549.3 360 73.6
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 4.3e-154 548.5 314 85.4
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 2.8e-153 545.8 406 67.7
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 4.7e-153 545.0 471 62.2
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 8.1e-153 544.3 354 77.4
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.1e-152 542.3 354 76.8
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 4.4e-151 538.5 354 72.0
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.4e-151 538.5 390 70.0
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 5.8e-151 538.1 398 67.6
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.9e-150 535.8 366 71.3
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.1e-149 533.9 406 66.3
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.4e-149 532.7 374 69.0
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 7.8e-148 527.7 368 69.0
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.0e-147 527.3 381 68.5
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 5.1e-147 525.0 355 71.3
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 6.2e-145 518.1 573 51.1
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.0e-143 513.1 406 66.0
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.9e-134 482.6 292 80.5
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 8.7e-131 471.1 344 65.7
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.1e-129 466.5 346 65.6
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.5e-124 449.1 343 67.9
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.9e-123 445.7 362 65.7
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 4.0e-75 286.2 373 46.4
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 8.9e-75 285.0 194 74.2
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 4.5e-71 272.7 147 85.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 8.6e-62 241.9 169 66.3
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 6.8e-59 232.3 292 49.0
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 7.5e-58 228.8 190 65.3
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 4.9e-57 226.1 152 73.7
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 3.3e-45 186.8 112 82.1
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 6.0e-39 166.0 112 72.3
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.7e-33 147.9 369 29.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.8e-33 146.7 81 82.7
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 6.0e-31 139.4 95 73.7
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.5e-26 124.8 66 81.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 3.4e-18 97.1 53 84.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.4e-11 75.1 97 45.4
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 4.5e-10 70.1 45 68.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.5e-08 64.3 79 45.6


User provided reference genes

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