Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 4.9e-239 830.9 458 100.0
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 4.2e-174 615.1 452 69.0
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 4.1e-153 545.4 456 61.0
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 1.7e-151 540.0 457 59.3
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 2.8e-146 522.7 466 57.7
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 6.3e-146 521.5 455 58.2
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 5.4e-145 518.5 457 58.6
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 1.2e-144 517.3 458 56.3
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 2.7e-144 516.2 458 56.8
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 2.9e-143 512.7 453 57.8
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 7.2e-142 508.1 460 59.1
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 1.2e-141 507.3 453 57.6
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 2.1e-141 506.5 456 57.0
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 3.6e-141 505.8 452 56.0
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 2.8e-138 496.1 455 53.4
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 4.9e-138 495.4 456 56.8
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.8e-137 493.4 461 57.9
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 4.1e-137 492.3 455 53.2
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 4.5e-136 488.8 457 54.9
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 2.3e-135 486.5 452 53.5
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 1.7e-130 470.3 458 53.1
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 6.4e-130 468.4 459 52.9
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 6.4e-130 468.4 456 51.1
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 1.8e-129 466.8 459 52.9
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 2.4e-129 466.5 454 52.4
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 1.6e-128 463.8 459 52.9
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 2.0e-128 463.4 457 52.5
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 5.0e-127 458.8 411 58.4
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 6.6e-127 458.4 459 50.5
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 1.9e-126 456.8 439 55.6
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 2.5e-126 456.4 462 53.9
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 4.3e-126 455.7 457 52.1
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 9.5e-126 454.5 457 50.8
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 2.8e-125 453.0 495 50.7
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 5.2e-124 448.7 456 51.3
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 9.8e-123 444.5 454 48.5
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 1.7e-122 443.7 454 49.3
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 2.2e-122 443.4 459 50.3
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 2.9e-122 443.0 448 53.3
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 6.4e-122 441.8 454 49.6
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 1.4e-121 440.7 459 49.9
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 1.9e-121 440.3 459 50.3
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 4.1e-121 439.1 499 46.7
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 1.6e-120 437.2 450 50.9
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 2.0e-120 436.8 458 50.4
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 6.0e-120 435.3 459 47.7
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 3.9e-119 432.6 455 50.8
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 5.0e-119 432.2 460 50.2
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 1.5e-118 430.6 453 48.8
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 7.3e-118 428.3 454 48.5
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 9.5e-118 427.9 449 49.7
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 2.1e-117 426.8 453 50.8
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 2.1e-117 426.8 458 46.5
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 6.2e-117 425.2 454 46.9
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 1.1e-116 424.5 455 47.7
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.1e-116 424.5 456 50.2
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 4.0e-116 422.5 454 47.1
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 8.9e-116 421.4 463 49.5
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.5e-115 420.6 460 48.9
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 2.6e-115 419.9 460 48.7
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 4.4e-115 419.1 455 49.2
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 2.9e-114 416.4 457 48.6
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 4.9e-114 415.6 474 48.5
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 5.4e-113 412.1 454 46.7
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 1.2e-112 411.0 464 47.6
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 2.7e-112 409.8 454 46.0
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 2.7e-112 409.8 377 54.1
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 1.3e-111 407.5 455 46.4
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 2.3e-111 406.8 457 46.2
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 1.5e-110 404.1 473 47.4
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 5.6e-110 402.1 459 49.2
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 2.1e-109 400.2 458 46.3
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 2.1e-109 400.2 466 45.3
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 8.9e-108 394.8 446 47.8
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 3.4e-107 392.9 459 47.5
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 4.4e-107 392.5 455 45.3
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 9.2e-105 384.8 471 44.6
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 8.7e-103 378.3 438 45.7
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 1.5e-102 377.5 496 44.4
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 3.1e-100 369.8 402 46.8
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 3.4e-99 366.3 558 41.6
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 4.4e-99 365.9 459 43.4
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 4.9e-98 362.5 461 44.7
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 1.0e-95 354.8 463 43.8
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 4.8e-93 345.9 469 42.0
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 1.1e-92 344.7 466 43.1
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 3.1e-92 343.2 448 44.9
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 1.3e-90 337.8 458 42.6
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 8.4e-90 335.1 461 42.3
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 8.7e-87 325.1 330 53.0
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 8.7e-87 325.1 418 42.8
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.2e-83 314.7 472 40.5
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 3.1e-76 290.0 469 38.6
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 9.0e-76 288.5 236 61.9
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 4.5e-75 286.2 457 37.4
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-74 285.0 473 37.4
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 2.1e-72 277.3 369 44.4
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 6.0e-72 275.8 462 37.7
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 7.9e-72 275.4 343 44.0
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 6.7e-71 272.3 451 38.6
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 1.9e-70 270.8 459 37.3
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 3.9e-63 246.5 349 39.8
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 6.7e-63 245.7 479 35.3
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.0e-50 205.3 379 34.0
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 5.3e-44 183.0 301 38.2
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 1.2e-40 171.8 349 32.1
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 3.0e-39 167.2 162 51.2
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 3.4e-30 137.1 137 54.7
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 1.3e-29 135.2 244 36.5
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 1.2e-27 128.6 115 54.8
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 2.0e-27 127.9 455 25.7
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 1.1e-25 122.1 240 34.2
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 7.2e-25 119.4 329 25.8
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 6.8e-23 112.8 175 38.3
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 7.5e-22 109.4 132 45.5
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 5.0e-18 96.7 89 55.1
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 1.4e-15 88.6 217 26.7
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 2.2e-13 81.3 109 41.3
CBR_g12009 Chara braunii HOM05D006101 ORTHO05D007422 3.3e-09 67.4 253 24.5
Glyma.09G075800 Glycine max HOM05D006101 ORTHO05D007422 1.6e-08 65.1 57 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 4.0e-07 60.5 425 22.6


User provided reference genes

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