Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 7.7e-155 551.2 470 100.0
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.0e-119 433.0 483 74.5
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.4e-118 429.5 488 86.9
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 2.0e-46 191.0 502 57.2
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 8.4e-45 185.7 500 57.0
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.1e-39 168.7 268 45.5
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 1.8e-39 167.9 473 59.2
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.8e-39 167.9 501 47.5
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 3.1e-39 167.2 272 43.8
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 3.4e-38 163.7 487 57.9
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 1.4e-36 158.3 266 42.9
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 2.5e-36 157.5 489 57.9
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.1e-35 154.5 490 58.2
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 2.7e-35 154.1 477 50.3
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 7.9e-35 152.5 485 49.5
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.4e-34 151.8 489 58.3
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 2.3e-34 151.0 478 54.2
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 5.1e-34 149.8 284 39.1
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 5.1e-34 149.8 284 39.1
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 5.1e-34 149.8 483 52.0
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 6.7e-34 149.4 484 58.1
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.5e-33 148.3 475 58.1
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 2.0e-33 147.9 278 42.1
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 2.5e-33 147.5 484 55.2
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 4.3e-33 146.7 556 50.9
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 2.2e-32 144.4 478 57.1
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 6.3e-32 142.9 308 37.3
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 8.2e-32 142.5 307 37.1
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 1.1e-31 142.1 489 54.2
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 6.9e-31 139.4 482 50.8
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 6.9e-31 139.4 275 40.4
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 2.0e-30 137.9 500 47.2
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 2.6e-30 137.5 274 37.2
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 5.9e-30 136.3 494 47.4
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 2.9e-29 134.0 487 50.1
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 3.8e-29 133.7 484 57.2
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 3.8e-29 133.7 444 61.0
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 3.8e-29 133.7 499 50.3
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 5.5e-28 129.8 275 37.8
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 7.2e-28 129.4 480 55.4
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 1.6e-27 128.3 479 56.2
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.1e-27 127.9 276 38.0
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 4.7e-27 126.7 270 39.6
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.1e-27 126.3 290 35.5
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 3.0e-26 124.0 286 36.4
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 3.0e-26 124.0 476 54.6
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 8.8e-26 122.5 475 53.1
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 1.1e-25 122.1 491 46.0
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 2.0e-25 121.3 270 36.7
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.6e-25 120.9 476 53.4
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 4.4e-25 120.2 274 32.8
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 3.7e-24 117.1 287 35.5
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 4.8e-24 116.7 274 36.5
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 6.3e-24 116.3 275 40.4
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 8.2e-24 115.9 522 50.8
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 1.8e-23 114.8 478 53.6
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 1.8e-23 114.8 486 41.6
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.8e-23 114.8 523 51.6
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 2.4e-23 114.4 476 51.5
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 3.1e-23 114.0 281 34.5
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 4.1e-23 113.6 503 53.1
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 4.1e-23 113.6 517 52.0
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 9.1e-23 112.5 500 52.0
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 1.5e-22 111.7 483 41.6
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 2.6e-22 110.9 267 37.5
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.2e-21 107.8 306 33.7
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 5.0e-21 106.7 282 33.0
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 8.5e-21 105.9 488 45.9
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.2e-20 104.0 285 35.4
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 4.2e-20 103.6 274 34.3
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 5.5e-20 103.2 476 46.6
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.2e-20 102.8 289 35.6
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 9.4e-20 102.4 161 44.7
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 2.1e-19 101.3 272 35.3
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 2.7e-19 100.9 282 34.4
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 2.6e-17 94.4 270 31.9
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 4.4e-17 93.6 275 36.0
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 2.8e-16 90.9 265 31.7
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 6.3e-16 89.7 477 44.7
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 8.2e-16 89.4 78 61.5
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 4.1e-15 87.0 246 36.2
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 2.6e-14 84.3 345 49.3
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 2.6e-14 84.3 269 30.5
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 5.9e-14 83.2 273 35.2
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 1.0e-13 82.4 277 31.4
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 6.5e-13 79.7 502 50.6
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 8.5e-13 79.3 187 36.4
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 2.7e-11 74.3 270 30.4
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 3.6e-11 73.9 475 52.0
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 8.0e-11 72.8 395 60.8
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.4e-10 72.0 59 55.9
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 4.0e-10 70.5 473 51.0
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 5.2e-10 70.1 68 50.0
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 1.2e-09 68.9 268 29.1
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 5.7e-09 66.6 264 28.0
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.7e-08 65.1 61 57.4
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 2.2e-08 64.7 277 28.2
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 1.8e-07 61.6 277 26.7
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 4.1e-07 60.5 43 65.1
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 5.4e-07 60.1 40 75.0
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 9.1e-07 59.3 42 66.7
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 2.0e-06 58.2 184 34.2


User provided reference genes

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