Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 0.0e+00 1101.7 536 100.0
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 9.0e-261 903.3 528 81.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.8e-246 855.1 533 76.4
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 2.2e-243 845.5 516 76.4
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.5e-242 842.8 536 74.4
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 5.5e-242 840.9 526 75.7
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.4e-240 836.3 516 74.6
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.0e-239 832.4 515 75.1
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 8.2e-238 827.0 518 75.3
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 1.1e-237 826.6 518 73.4
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.8e-237 825.9 514 74.1
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.1e-237 825.1 519 74.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.0e-236 822.4 519 74.4
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 7.7e-236 820.5 522 73.8
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.3e-235 819.7 519 73.8
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 3.8e-235 818.1 519 75.1
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.8e-235 818.1 550 71.1
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 7.2e-234 813.9 515 72.4
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-233 813.1 536 71.1
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.7e-233 812.0 535 72.3
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 6.1e-233 810.8 518 73.9
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.3e-232 808.9 514 73.2
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 4.0e-232 808.1 536 72.4
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 6.8e-232 807.4 516 73.4
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 8.8e-232 807.0 523 70.7
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 1.2e-231 806.6 515 71.8
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.0e-231 805.8 515 71.8
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.4e-231 804.7 535 70.1
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 9.8e-231 803.5 521 70.8
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 9.8e-231 803.5 514 71.8
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-229 799.7 532 69.5
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.8e-229 799.3 523 69.8
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 7.0e-229 797.3 524 70.8
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 9.1e-229 797.0 521 69.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.5e-228 795.0 520 71.2
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.7e-227 792.7 508 72.2
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.2e-227 792.3 518 71.6
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 2.9e-227 792.0 525 70.5
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.5e-226 789.6 518 71.4
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 4.2e-226 788.1 519 69.6
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 4.2e-226 788.1 520 69.8
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 5.5e-226 787.7 519 70.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.1e-225 785.8 522 69.2
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 3.6e-225 785.0 527 68.1
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 6.1e-225 784.3 519 70.7
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.0e-224 783.5 519 68.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.8e-224 782.7 521 70.2
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 5.2e-224 781.2 515 70.9
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.2e-223 780.0 518 71.8
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.6e-223 778.9 517 69.6
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.3e-222 776.5 519 69.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.3e-222 776.5 529 69.0
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.1e-221 773.5 520 68.8
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 3.1e-221 771.9 519 68.8
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 5.4e-221 771.2 520 68.5
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 5.4e-221 771.2 520 68.1
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 5.4e-221 771.2 520 68.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.2e-220 770.0 524 69.3
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 2.0e-220 769.2 513 73.1
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 3.5e-220 768.5 519 70.1
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 1.3e-219 766.5 533 68.5
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 2.9e-219 765.4 537 68.2
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 6.6e-219 764.2 590 62.4
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 8.6e-219 763.8 520 67.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.5e-218 762.3 520 67.5
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 4.3e-218 761.5 519 68.4
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.2e-217 760.0 499 70.3
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 6.1e-217 757.7 544 65.4
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.0e-215 752.7 490 71.4
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.3e-214 750.0 472 72.5
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.7e-214 749.6 537 65.4
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.7e-214 748.4 545 64.6
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.9e-211 738.4 469 72.1
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 7.0e-205 717.6 517 65.4
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 6.0e-204 714.5 517 67.5
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.0e-203 713.8 557 62.8
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.5e-202 709.9 522 66.1
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 2.0e-199 699.5 516 63.6
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.6e-199 699.1 519 65.7
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 2.6e-199 699.1 520 63.5
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.4e-199 698.7 687 53.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 5.8e-199 698.0 548 64.2
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 1.4e-197 693.3 588 60.9
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 3.0e-195 685.6 519 63.6
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.3e-194 681.8 579 59.2
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 4.7e-193 678.3 398 77.1
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 8.1e-193 677.6 525 60.2
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.6e-191 671.0 530 62.3
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.7e-190 669.8 444 71.8
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 3.9e-187 658.7 524 58.0
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 1.5e-186 656.8 390 75.6
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 5.2e-184 648.3 429 69.9
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 7.8e-180 634.4 521 61.4
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.0e-179 634.0 506 61.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 3.0e-179 632.5 521 60.5
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 7.4e-170 601.3 420 64.8
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.3e-166 590.5 363 74.4
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.2e-165 585.5 496 59.1
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 5.6e-162 575.1 540 53.3
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.0e-155 554.3 516 53.5
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.2e-151 540.8 333 73.3
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.9e-149 533.5 514 54.7
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.9e-148 528.1 305 78.7
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 2.0e-143 513.5 503 53.3
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 9.4e-141 504.6 523 50.1
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.5e-138 497.3 350 66.6
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 3.2e-133 479.6 542 45.9
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.3e-129 467.6 286 74.5
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.7e-129 466.1 351 66.1
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.1e-128 464.5 253 82.2
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.7e-126 457.2 435 51.3
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.3e-122 443.0 345 61.7
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.4e-115 421.0 285 68.1
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 4.8e-113 412.5 230 79.6
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 7.7e-111 405.2 231 78.8
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 7.7e-111 405.2 231 78.8
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 2.1e-108 397.1 231 75.8
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 9.9e-82 308.5 530 37.2
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.9e-80 304.3 168 79.2
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.5e-79 300.1 217 67.3
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.1e-78 296.2 220 66.4
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.1e-72 278.5 543 35.5
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 7.8e-71 272.3 241 58.1
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 2.5e-69 267.3 557 32.0
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 2.8e-68 263.8 516 36.2
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 6.9e-67 259.2 169 69.2
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 3.4e-66 256.9 489 35.4
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.9e-61 241.1 354 42.9
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.9e-56 224.6 205 53.2
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.2e-50 205.3 257 43.2
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 1.4e-40 171.8 158 58.2
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 3.5e-39 167.2 341 33.1
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 3.4e-34 150.6 85 70.6
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 6.7e-30 136.3 99 67.7
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.5e-29 135.2 197 41.1
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.5e-29 135.2 79 79.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.4e-27 127.9 103 65.0
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 5.3e-27 126.7 115 58.3
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 2.0e-26 124.8 122 48.4
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 2.9e-25 120.9 105 58.1
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.0e-22 110.9 92 57.6
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.6e-18 97.8 307 29.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 9.7e-13 79.3 41 73.2
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.3e-11 73.6 96 40.6
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 2.2e-09 68.2 50 66.0
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 3.2e-08 64.3 80 45.0
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 2.7e-07 61.2 67 47.8
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 6.1e-07 60.1 44 59.1


User provided reference genes

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