Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 0.0e+00 1125.9 567 100.0
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 1.1e-293 1012.7 570 88.1
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 8.6e-286 986.5 549 87.1
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 2.5e-285 984.9 549 87.4
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 1.2e-282 976.1 573 84.6
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 7.5e-282 973.4 571 84.6
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 2.1e-279 965.3 578 82.4
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 2.7e-279 964.9 569 84.5
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 4.6e-279 964.1 567 84.0
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 6.0e-279 963.8 560 84.3
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 1.0e-278 963.0 576 84.0
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 3.0e-278 961.4 578 82.0
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 3.0e-278 961.4 575 83.8
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 8.6e-278 959.9 546 85.9
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.1e-277 959.5 569 84.0
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 1.5e-277 959.1 548 85.2
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 1.5e-277 959.1 571 84.1
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 1.9e-277 958.7 569 84.0
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.5e-277 958.4 569 83.8
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.3e-277 957.6 580 81.4
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 5.6e-277 957.2 569 83.8
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 9.5e-277 956.4 557 84.6
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 9.5e-277 956.4 552 84.2
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.2e-276 956.1 557 84.6
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 1.6e-276 955.7 580 81.4
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 3.6e-276 954.5 580 80.9
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 8.1e-276 953.4 546 84.8
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 3.4e-274 948.0 541 85.6
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 7.5e-274 946.8 571 82.5
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 1.1e-272 943.0 557 83.3
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 1.4e-272 942.6 583 80.8
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.9e-272 942.2 580 80.2
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 1.9e-272 942.2 547 83.0
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 7.1e-272 940.3 575 79.8
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 9.2e-272 939.9 557 82.8
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 6.0e-271 937.2 593 79.4
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 6.0e-271 937.2 521 86.9
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 5.1e-270 934.1 567 81.5
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 5.1e-270 934.1 525 86.7
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 6.6e-270 933.7 542 82.3
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 6.6e-270 933.7 542 82.3
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 1.1e-269 932.9 525 86.1
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 1.9e-269 932.2 521 86.4
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 2.5e-269 931.8 553 83.0
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 3.3e-269 931.4 542 82.5
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 4.3e-269 931.0 542 82.3
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 4.3e-269 931.0 521 87.1
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 4.3e-269 931.0 570 80.0
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 5.6e-269 930.6 542 82.3
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 9.5e-269 929.9 547 81.7
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 9.5e-269 929.9 542 81.5
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 1.6e-268 929.1 571 81.8
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 1.6e-268 929.1 521 86.9
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 2.1e-268 928.7 570 80.9
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 1.8e-267 925.6 575 79.3
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 4.0e-267 924.5 560 82.1
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 2.0e-266 922.2 508 88.8
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 7.6e-266 920.2 542 80.4
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.7e-265 919.1 549 81.6
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 2.2e-265 918.7 542 81.2
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 2.9e-265 918.3 555 79.8
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 3.8e-265 917.9 542 81.0
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 8.4e-265 916.8 542 81.0
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 1.4e-264 916.0 555 79.6
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 4.2e-264 914.4 542 80.8
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 4.2e-264 914.4 542 80.8
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 4.2e-264 914.4 542 80.8
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 7.1e-264 913.7 548 81.2
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 1.2e-263 912.9 582 79.0
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 2.1e-263 912.1 549 81.1
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.0e-262 909.8 561 77.2
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 5.1e-262 907.5 563 79.9
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 3.3e-261 904.8 684 69.4
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 5.6e-261 904.0 552 78.3
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 9.6e-261 903.3 549 80.5
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 1.2e-260 902.9 549 80.3
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.1e-260 902.1 569 78.9
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 3.6e-260 901.4 575 77.9
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 6.2e-260 900.6 521 83.5
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 2.4e-259 898.7 549 80.1
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 3.1e-259 898.3 557 77.2
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 5.3e-259 897.5 536 80.0
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 6.9e-259 897.1 550 79.3
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.8e-257 891.3 586 76.5
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 6.4e-257 890.6 521 83.5
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.4e-256 889.4 541 79.3
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 8.7e-254 880.2 540 79.4
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 5.6e-253 877.5 521 82.0
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 1.3e-252 876.3 566 75.3
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 1.5e-250 869.4 564 78.9
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 8.4e-249 863.6 542 77.5
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 4.2e-248 861.3 573 75.0
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 3.0e-246 855.1 542 76.4
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 2.2e-241 839.0 566 74.6
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 1.1e-240 836.6 486 86.0
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 9.3e-240 833.6 542 74.0
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 1.0e-238 830.1 468 85.9
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.3e-238 828.9 521 79.5
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 6.2e-236 820.8 468 82.7
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 3.1e-235 818.5 469 83.2
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 1.5e-234 816.2 467 85.2
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 2.6e-234 815.5 439 90.0
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 5.8e-234 814.3 564 70.7
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 9.3e-232 807.0 443 88.7
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 9.7e-229 797.0 542 70.3
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 1.4e-222 776.5 466 80.0
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.1e-216 756.9 541 69.9
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.1e-203 713.8 542 64.8
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 8.5e-193 677.6 464 73.9
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.1e-192 677.2 564 59.2
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 4.7e-183 645.2 576 62.0
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 7.5e-173 611.3 565 54.7
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 4.9e-172 608.6 527 58.3
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 3.7e-156 555.8 461 59.7
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 2.7e-146 523.1 510 52.5
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 4.8e-143 512.3 332 77.7
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 6.2e-127 458.8 289 79.9
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 2.6e-88 330.5 254 61.4
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 1.1e-78 298.5 158 89.2
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 4.1e-54 216.9 504 29.0
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 1.3e-44 185.3 208 51.0
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 2.8e-34 151.0 90 83.3
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 3.9e-28 130.6 435 25.3
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 6.9e-25 119.8 65 84.6
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.9e-23 114.4 76 76.3
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 9.6e-19 99.4 76 64.5
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 8.1e-10 69.7 404 24.8
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 3.8e-07 60.8 303 24.4
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.8e-07 60.8 30 90.0
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 8.4e-07 59.7 492 22.6


User provided reference genes

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